Detailed information on CNT30482060


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374334Chara brauniiArabidopsis thaliana25.631.3488.0492forward
CNT30501326Chara brauniiCoffea canephora25.630.8790.2292forward
CNT30226086Chara brauniiHordeum vulgare25.631.7391.392forward
CNT30544951Chara brauniiBrassica napus25.6314.6788.0492forward
CNT30239040Chara brauniiBrassica oleracea25.6317.3988.0492forward
CNT30689619Chara brauniiTriticum urartu25.635.7991.392forward

Expression of CNT30482060

Peptides detected in this lncRNA

>peptide 1 (50 aa)
AKIDFPAVLFMFAFGFSLGTKCNHLNSISNLSEIDLRFLALYYMDSFLSL*

Sequence

>CNT30482060
GCGAAGATTGATTTTCCCGCAGTTCTTTTCATGTTTGCCTTTGGGTTCTCTTTAGGCACGAAGTGCAACCATCTAAACTCTATAAGCAACTTGTCAGAAA
TTGATCTTAGATTTCTGGCATTATATTATATGGACTCCTTCCTGAGCCTTTGAGAACATTTACCTATGAACAAGCTATCGGTACCTTTATTTTATTTTAT
TTATGGTAAGTCCTAGGTATTCACCACATTGTTGCAGTGGTGTGGTTGCAAAAATCTAGCACAGTGTATATATTATAGCAATCACACTAAGAGTATAAAT
GAAAGGAGTGAAATAAAGAGTAGCTTCTGGAAACATTGGTATTGAAAATCTTAAAAAAC