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Detailed information on CNT30481719


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30213223Chara brauniiHelianthus annuus15.4824.8189100forward
CNT30127030Chara brauniiCorymbia citriodora14.7144.3988.4295forward

Expression of CNT30481719

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SHTQGQRTKWALELRNCLLEAAPAFVLEQTLRV*

>peptide 2 (54 aa)
MYEGHEVGEARTTGKFDHFSSLNLVQSINTCNSISYRNHSTDFIHLFGKFLKTK*

>peptide 3 (54 aa)
RTLKASERSGRSNSETACWRQHPHLYSSRRFASDLSXEWSQRRNGKQRPLLFDI*

>peptide 4 (58 aa)
AHSRPANEVGARTPKLLAGGSTRICTRADASRLIYRXSGAKGATGSRGLSYLTFKAEG*

Sequence

>CNT30481719
TCGCACACTCAAGGCCAGCGAACGAAGTGGGCGCTCGAACTCCGAAACTGCTTGCTGGAGGCAGCACCCGCATTTGTACTCGAGCAGACGCTTCGCGTCT
GATCTATCGCMAGAGTGGAGCCAAAGGCGCAACGGGAAGCAGAGGCCTCTCTTATTTGACATTTAAGGCCGAAGGATGATTCATATATGAGAATTGACTC
AACTCATTCTCGGTCGTAGTAATGAATGTATGAAGGCCACGAAGTGGGAGAGGCAAGAACCACTGGAAAATTCGACCATTTCTCCAGCTTGAATCTTGTT
CAATCCATAAACACGTGCAATTCCATCTCCTACCGAAACCACTCGACCGATTTCATCCACTTATTTGGCAAATTTCTCAAGACAAAATAGCTGACAGATC
TAATATGGAGACTTGAAGGATAAGAAAGATAATTAATAAAGCGCCCATTGGAACTGTTTGTAAGAAACCATTCTAACTAAAGATATAAATAAAGATACAT
ATAGTGCCGGAAAAGTGAAAATAAGGCCTCAACCATACATATCGCTCTTCGTTTCTAGTGTAAGGCTAGCGGGTCTCGAACCCACAAGGCGCGAAGCGCC
GCCACATCCTAAGTGTGGTGCGTAAACCAATTTCGCCATAGCCGTT