Detailed information on CNT30481599


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697144Chara brauniiOryza sativa22.9712.5687.25102forward
CNT30555388Chara brauniiOryza glaberrima22.9720.2487.25102forward
CNT30210701Chara brauniiHelianthus annuus22.5211.483100forward
CNT30597100Chara brauniiOryza meridionalis22.7513.7487.13101forward
CNT30356872Chara brauniiLactuca sativa22.5217.2483100forward
CNT30371307Chara brauniiOryza glumipatula22.529.2387100forward
CNT30321864Chara brauniiAsparagus officinalis22.321.4384.8599forward
CNT30104120Chara brauniiOryza rufipogon22.9725.5687.25102forward
CNT30578126Chara brauniiOryza barthii22.9712.1187.25102forward
CNT30117889Chara brauniiOryza nivara22.9718.0587.25102forward

Expression of CNT30481599

Peptides detected in this lncRNA

>peptide 1 (39 aa)
ACLFSTYLLNVFLLLPRCCLPCGWHLSPISPSLSHCNAF*

>peptide 2 (57 aa)
MSSFFFQDAACHVAGTSLLFLLPSLIAMLSDCHPPLPMRTTWCEEPKRVDIHVSTWQ*

>peptide 3 (72 aa)
MSFFNLLIECLPSSSKMLPAMWLAPLSYFSFPLSLQCFLIATPLCPCEQHGARNPRGWTSMLARGSDGPPSS*

Sequence

>CNT30481599
GCATGTCTTTTTTCAACCTACTTATTGAATGTCTTCCTTCTTCTTCCAAGATGCTGCCTGCCATGTGGCTGGCACCTCTCTCCTATTTCTCCTTCCCTCT
CTCATTGCAATGCTTTCTGATTGCCACCCCCCTCTGCCCATGCGAACAACATGGTGCGAGGAACCCAAGAGGGTGGACATCCATGTTAGCACGTGGCAGT
GACGGACCCCCAAGTTCATAATCTAGCTATGCCTGTTGCATGAGATCAGTTGGCTAGCCTCAAGGCCCTCCCGTTAGTCTGGCAGCAGTAAACCATCTAT
AAGGTAGGCATCTTCTCAATGCCACCTCCAAGGACAGTAAGGAGGTTCTCAACAGGGCCATCACCAGTGACATAGGCCTGGATGAAGAAACCAAGCATGG
AGAACATGGCCAGGCGGCCATTTTTGATCTCCTTAACCTTCAGG