Detailed information on CNT30481499


BLAST search results

BLAST vs Swiss-Prot:
sp|P16031|RBS_LARLA, E-value = 7e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30124778Chara brauniiPhyscomitrium patens9.2131.7685.1194forward
CNT3041036Chara brauniiChlamydomonas reinhardtii7.0520.488.8972forward
CNT30605276Chara brauniiGossypium raimondii15.8741.0182.1162forward
CNT3039544Chara brauniiMarchantia polymorpha6.0723.3190.3262forward

Expression of CNT30481499

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MVPNPNRFSFTLPPILLLLSLSLCLFVSLSLSLSLSLPHTHTHTHTHRVTQSSMACAR*

>peptide 2 (87 aa)
MNHLGGGREGEHLRTHLKLSLQSDDRLSIPAPVLFSLSLSLSLSLSLSLSLSLSLSRSLARSLSLPTDLPNSMMTCPLDRQPSTNGA*

>peptide 3 (31 aa)
MHSTRELLDTERTLLEATGAALETAAVAAVD*

>peptide 4 (50 aa)
MKPAHCTWRMLSKPMTLMKALGYSVLHCWISVSTCAGSVQPNMGSFHMVQ*

Sequence

>CNT30481499
AACGTTTAGATAAACGACGCATCGCAGCCGACAACGGAATGCGAGAATGAATCACCTTGGAGGGGGCCGGGAAGGAGAGCATCTGCGAACACATCTCAAA
CTGTCTCTCCAGTCCGACGACAGACTATCCATACCAGCTCCTGTACTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCGCTCGCTCGCTCGCTCTCTCTCTCTACCTACCGACCTACCTAATTCCATGATGACCTGCCCTCTTGACCGACAACCAAGCACCAA
TGGTGCCTAATCCAAATCGTTTCTCATTCACTCTCCCTCCCATCCTCCTCCTCCTCTCTCTGTCTCTCTGTCTGTTTGTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTCCACACACACACACACACACACACACACACAGAGTGACGCAATCGTCTATGGCTTGTGCACGATGAAGCCGGCGCACTGCACCTGGCGCA
TGTTATCGAAGCCGATGACTCTGATGAAGGCCTTGGGGTATTCCGTCTTGCACTGCTGGATCTCAGTCAGCACCTGCGCGGGGTCAGTGCAGCCGAACAT
GGGGAGCTTCCACATGGTCCAGTAGCGGCCGTCGTAGTAGGTGGGCCAGTCGCCGTTGGTGCGGCTGATATCACCCACCTCGTCGAACTCCACGGTGGGA
ATCCATCCCTTGTTGAGCAGGTAGGAGAGCGTCTCGAACTTCTTGTTGTTGTACGGGTTCCACACCTTCATGCACTCCACTCGCGAGCTGTTGGACACGG
AACGGACGCTGCTGGAGGCAACAGGGGCTGCGCTCGAGACAGCCGCCGTGGCAGCCGTAGACTGAGCAAGGGCCGCCATCTCGAAAGCTTGGGCACGAAG
GAGAGAGGAGGGGACGAGGAGGAGGACGACGACGAAAGCGCTAGCGAAGGGGCTGCACAGGGACTCCTGAGAGCGCTTCGCAGCAGCTAACCCGTGCTGA
TTCTCAGCGCTTGCCTCCGCT