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Detailed information on CNT30481419

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30618998	Chara braunii	Sesamum indicum	33.84	17.84	83.85	291	forward
CNT30200883	Chara braunii	Pisum sativum	33.84	20.06	85.22	291	forward
CNT30194088	Chara braunii	Secale cereale	28.37	24.87	84.43	244	forward
CNT30212621	Chara braunii	Helianthus annuus	33.84	16.67	85.22	291	forward
CNT30684056	Chara braunii	Triticum urartu	33.84	12.18	85.57	291	forward
CNT30571978	Chara braunii	Vitis vinifera	33.84	6.31	85.57	291	forward

Expression of CNT30481419

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MFKPSDHTNAVFNVTPLCLAPSAQSTLLVLPSVPAFMQQAPFDFEDQCTRRQHQCQPPTCTRYVLLSPSSLHPPTSTAPPPED

>peptide 2 (69 aa)
MSLLSVWRPVPSLLYLSYLAYLRSCNRLPSTLKTNVHVVNTNANLPHAPGTYSYLPHLSIHPLPLRLLLK

>peptide 3 (34 aa)
MYTSSTPMPTSHMHQVRTLISLISPSTHFHCASS*

>peptide 4 (31 aa)
WVRTGKASRPGGRRNNNDICRYATDCLLRSS*

Sequence

>CNT30481419
GTGGGTGAGAACTGGGAAAGCTTCTCGACCTGGTGGTCGACGTAACAATAATGACATTTGTCGATATGCCACTGATTGTTTACTTAGATCATCATAGATA
ATTAGAGTGTGCATTCCATTGTCTCGGAAAAATTCTCCCATAGCACAACCTGCATAAGGAGCAAGAAATTGAAGAGGAGCAGGATCTGATGCAGTGGCTG
CCACAATAATAGAATATTCTAAAGCACCCGCTTCTGAAAGAATTTTCACTAATTGTGCTACGGTCGAACGCTTCTGACCAATTGCTACATACACACAATA
CAGCTTTTCTTTCTCAGAGGCACCTTTTGCATTGATCTGCTTCTGATTCAATATAGTATCAATAGCTATAGCAGTCTTACCTGTTTGTCATCTTTGTTGG
GGGGTAGTTCATTATGGCGGGGGACGGCATGCGCAGGTGATGCGCACACCCCGATTTTGGGAGTGAGGCTCCACCTGCACATGGTGCGGCCGCAGAAAAA
GTCGGCCGCGGGGTTGCAGCCCGCCTCCTCAGCCGCGGACGTGGGGATCACATAGCTCACATGCACCAAGATTCCATCCAAATAAGAGCAATGCAATGAA
CTCGTGAACCAATGTTCAAGCCCTCAGACCACACCAACGCAGTGTTCAATGTCACTCCTCTCTGTCTGGCGCCCAGTGCCCAGTCTACTCTACTTGTCCT
ACCTAGCGTACCTGCGTTCATGCAACAGGCTCCCTTCGACTTTGAAGACCAATGTACACGTCGTCAACACCAATGCCAACCTCCCACATGCACCAGGTAC
GTACTCTTATCTCCCTCATCTCTCCATCCACCCACTTCCACTGCGCCTCCTCCTGAAGAT