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Detailed information on CNT30481387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3091389Chara brauniiSolanum tuberosum7.1420.5683.9581forward

Expression of CNT30481387

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MTFCASHLLIKLQLNILIPVDTAIIMVAAVK*

>peptide 2 (36 aa)
MQWLPQFTIIIRHYIQTKVSIVRILISHWSFFYIIN*

>peptide 3 (62 aa)
MTYEYTYDRYLCLYVVSYYYSEPGQEPWPSAYTEGRMKQTQFVVEDQVRSAFPCASRLTQET*

Sequence

>CNT30481387
CGTGCATTCCATTGTCTTGGAAAAATTCTCCCATAGCACAACCTGCATAAGGAGCAAGAAATTGAAGAGGAGCAGGATCTGATGCAGTGGCTGCCACAGT
TCACTATAATAATACGACACTACATACAAACAAAGGTATCTATCGTACGTATACTCATAAGTCATTGGTCTTTCTTTTATATTATTAATTAGTAGTAGCT
CCACGTAAAGTCTCAGAGGCCATACGCCAGACACACGGAAACTACCAATTGTGATGATATGGTCCAATCCTCATGGTGACATGAGGCGCAAGAGCGCGCA
TTGTTTTCGCCTAAGGTAATTTCGTTGCCTTACTTTCTAGGTGACTAAAAATAGGAAACTCCACTGTATGCGGGAAACTCCTCGAATAGATAGAATGAAT
TTAATTTCTAGATAGTAAGTAATAGTAATTAAATTCAATTAGAGGGCAATCCGCAGGAAACCAACATATATCTGTGTAGGATCCTCAGAGACTTTACGTG
GAGCTACTACTAATTAATAATATAAAAGAAAGACCAATGACTTATGAGTATACGTACGATAGATACCTTTGTTTGTATGTAGTGTCGTATTATTATAGTG
AACCCGGGCAAGAGCCGTGGCCTTCGGCCTACACAGAGGGGCGTATGAAACAAACTCAATTTGTAGTAGAAGATCAAGTCCGGTCTGCTTTTCCGTGCGC
TTCGCGCCTAACCCAAGAGACTTGATTTTGTGCCTTCCATTTCACGGCATGAATTTGGGTACTTAGGAGAGATATCCCATTATGACTTTTTGTGCTTCGC
ACCTGCTGATTAAGCTCCAACTAAATATCTTGATTCCAGTTGACACCGCTATAATCATGGTTGCTGCGGTGAAATAAGCTCGGGTCAATTCAACCACTAG
TTTCCTAATGGCATCGGACTATATCTTCAACCAGAGAGATACAGACACACCCTCCGTGTAAAGCTTAAAGTGATGAATTAAGGATTCCATGGATTGTTTC
ATTTGAGAGCGTGAAGGAGGACAAAGTTTACGATCATCCGCTTTGATGTAAAGCTTAAAGTGATGAATTAAGGATTCCATGGATTGTTTCATTTGAGAGC
GTGAAGGAGGACAAAGTTTACGATCATCCGCTTTG