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Detailed information on CNT30481385


BLAST search results

BLAST vs Swiss-Prot:
sp|P26849|NU5M_MARPO, E-value = 9e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30655408Chara brauniiRosa chinensis19.1626.0189.03155forward

Expression of CNT30481385

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTLSSNVLSFSFPVTVHILRQYDYHCHQHGFVGCMLNS*

>peptide 2 (59 aa)
MELPCLRESQSHALSAQEDHCVFFSLLIHQRCLGFRRDARRIIPPFIVSYIGKLNTNSS*

>peptide 3 (74 aa)
SQRALFLVVTKQRAFRAIRPRHAHTALNRHTYVEYNISQALTPLLVLVGFLLSVLPFALVKHHSQYCLYYKLCV*

Sequence

>CNT30481385
TTCACAACGTGCACTCTTTTTAGTAGTTACTAAACAACGTGCGTTTAGGGCCATCAGGCCCCGCCATGCACACACGGCCTTGAACCGGCATACATATGTG
GAATATAATATATCTCAGGCTTTGACTCCGTTGCTAGTACTGGTAGGCTTCTTACTCTCGGTCTTGCCTTTTGCTCTGGTTAAGCATCATAGCCAATATT
GTTTGTACTATAAACTATGTGTCTGATCACCGTCATTGTTATCCAGGTTACCCCAAGATTATCCAGAGAACATTGATGTCAATGTCATGACATTATCATC
AAATGTATTGTCATTTTCATTTCCAGTAACGGTGCATATCCTACGACAGTACGACTATCATTGTCATCAGCATGGCTTTGTTGGTTGTATGCTGAACTCC
TAATACCTCTTCTGTTGTTTATGGAGTTACCTTGTCTCAGAGAGTCTCAATCCCATGCTCTTTCTGCTCAGGAAGACCACTGTGTATTCTTTTCACTTTT
GATTCACCAGAGATGCCTCGGATTCAGGAGAGATGCTCGACGAATTATCCCCCCTTTTATTGTGAGTTACATCGGAAAGTTAAACACAAATAGCAGCTAG
TGCATGAATTTTCATATTAAAAAAAATGAAAGAAGGTTCCCACACAAAGGCACTAGCACAAGCAAAAATGGTTGAAAAGTCTACTGTTTGAAAAATAGCA
AAACAACCCATAATACCAAGAGCTAATCCAAAATCACCTACTCGATTCACAAGCATTGCTTTAATAGCTGCTTTATTTGCTTGAAGTCGTGTAAACCAAA
AATTATGTT