Detailed information on CNT30481012


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7YKY4|MATK_CHAGO, E-value = 7e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187765Chara brauniiSecale cereale23.2931.6883.53249forward
CNT30555227Chara brauniiOryza glaberrima27.6926.0185.14296forward
CNT30435024Chara brauniiAegilops tauschii12.0747.9686.05129forward
CNT30371457Chara brauniiOryza glumipatula27.6912.9785.14296forward

Expression of CNT30481012

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKNFHFSMYNPNTMSDFLFQKWKSRLYRSXY*

>peptide 2 (38 aa)
MTYFIHINQFRLLYISYVQYMVIIHVNKNSSIKCLQKE*

>peptide 3 (47 aa)
QRQSNSYALSRLRGIQTRSVCSSSRKVATAYFERCCGQGKVLLSTHG*

>peptide 4 (49 aa)
MSRPELANTIPVSPPMVNEENLYHGFVHKVIETKNLIVEWYEKLPFFHV*

>peptide 5 (56 aa)
KDSQILTRFRAFVGFRREASALRAVRLPPHTSKDVVAKERYSFRHMGNMGFVHTQC*

>peptide 6 (68 aa)
MLWPRKGTPFDTWVIWVLSILSVNWSLSLRNDSNSDLSFTASDRGPERHKRLDNPECGVACPQDLRNA*

Sequence

>CNT30481012
GCAAAGACAGTCAAATTCTTACGCGCTTTCGCGCCTTCGTGGGATTCAGACGCGAAGCGTCTGCTCTTCGAGCCGTAAGGTTGCCACCGCATACTTCGAA
AGATGTTGTGGCCAAGGAAAGGTACTCCTTTCGACACATGGGTAATATGGGTTTTGTCCATACTCAGTGTTAATTGGAGTTTGTCTCTAAGGAACGATTC
CAATTCAGATCTCAGTTTCACTGCTTCTGATCGTGGACCAGAGAGGCATAAGCGTCTGGATAATCCGGAATGCGGCGTGGCATGCCCGCAAGACCTAAGA
AATGCATAGGAAAGAAAGTCAAATTCACACCAAAGAAAGTAATCCAAAAATGAATTTGACCTAAGGTTTCTGGATATTGAAGTCCAGAGATTTTGCCTAT
CCAATAGTAGAATCCTGCAAATAGAGCRAATACGGCTCCCATAGAAAGTACGTAATGAAAGTGTGCTACTACATAATAAGTGTCATGTAGAGCAATGTCA
AGACCAGAATTAGCTAATACAATTCCAGTAAGTCCTCCTATGGTAAATGAAGAAAACTTGTATCACGGATTCGTTCATAAAGTAATAGAAACAAAAAATT
TAATTGTTGAATGGTATGAAAAACTTCCATTTTTCCATGTATAATCCAAATACAATGAGTGATTTTCTGTTCCAAAAATGGAAAAGCCGATTGTATAGAT
CGTTRTATTGAAATACAGGGATCGTTTTTTCTTGTCTTTTGGTGTTGCCATATCATTCGCAATATGAGAAGACAAACATTTTCTATCATGAAACCATAAA
ATCGATTTTTATATTGGAAATAGAATTCTGTTTCATAATTAGAAAATTTAGCGACACCATTGTACTTATGACTTTGTTTACGTATATGACGAATAAATCT
CTTAATCAGTAAATAATGACATATTTTATTCACATAAATCAATTTCGATTGCTTTATATTTCCTATGTTCAGTATATGGTTATTATTCATGTGAATAAAA
ACTCTAGTATAAAATGCCTCCAAAAAGAATAAAGGATAGAATCCTTGTTTAAGCTCATTCTTTTTTGAA