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Detailed information on CNT30480921


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1ACK0|RBL_CHAVU, E-value = 1e-41

BLAST vs NONCODE:
NONMEST005601, E-value = 3e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Chara brauniiOryza sativa24.874.0983.6189forward
CNT30678101Chara brauniiSetaria viridis18.4239.7785.71140forward
CNT3019929Chara brauniiCitrullus lanatus17.7631.1182.96135forward
CNT30629265Chara brauniiVigna unguiculata24.4716.4385.48186forward
CNT30201083Chara brauniiPisum sativum21.187.5485.71161forward
CNT30187973Chara brauniiSecale cereale29.2161.582.88222forward
CNT30290424Chara brauniiTriticum aestivum29.2113.8882.88222forward
CNT30565170Chara brauniiActinidia chinensis24.4716.2983.87186forward
CNT30539441Chara brauniiBrassica napus24.473.8183.33186forward
CNT30237533Chara brauniiBrassica oleracea24.4712.6383.33186forward
CNT30554212Chara brauniiOryza glaberrima24.875.0183.6189forward
CNT30435662Chara brauniiAegilops tauschii21.5851.4184.76164forward
CNT30257651Chara brauniiAvena sativa3040.582.89228forward
CNT3060115Chara brauniiArabidopsis lyrata24.477.8484.41186forward
CNT3017995Chara brauniiZea mays3014.7682.02228forward
CNT30683050Chara brauniiTriticum urartu29.2116.2882.88222forward
CNT30360303Chara brauniiLactuca sativa24.4735.8486.02186forward
CNT30434475Chara brauniiPapaver somniferum23.6846.8883.33180forward

Expression of CNT30480921

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQVVWYSSGIPLRRQVKIGVNLDVNKFVTDPSSNKSRG*

Sequence

>CNT30480921
TTCTGAAATGTGGGTTGGGGAAATTTTGACAAACTTTGCATGAAAGTGCACCTTTGCCTTGAAGTTTCATGCTGATTTTTCGTTTTTTCTTCATGGTTTT
CTTTTTTGCTGTTAGTTAGTATGGTGTTCACTCTATGTATGGGCGACAAGTTTGATTAAGAATGGCTTTGCGTTTCTTATGAATCGCATGACAAGCTTCT
GAAAATTCGGGCCTCTATGAACAACAGACACATTTAAGTCTGCAAAGCTGCCAAAGAACAATTCTGTCGAAGATGTAATGCCGCGAAGCTGCTAAAGAAT
CATTTTGCCGAAGAGTTAACCCTATTCACCACGTAGCTATAGCTATAGCCATCTGTCAAGGTGCGCCTGGACTATGCAAGTGGTGTGGTACTCGTCTGGT
ATTCCCCTGCGGCGGCAAGTGAAAATTGGGGTCAACTTAGATGTAAATAAATTTGTTACTGATCCTTCTTCAAACAAATCAAGAGGATAAGCAACATATG
CAATATACTGATTCTATTCATTCAATATCGTAGCATCTTCCTTTGTATCGGTCCAAACTAGTTAATCCGTCAGTCCAAACAGTAGTCCATGTACCAGTAG
AAGATTCTGYAGCTACTGCAGCACCTGCTTCTTCAGGTGGAACGCCAGGTTGTGGAGTTACACGAAATGCAGCTAAAATGTCAGTGTCTTTAGTTTTATA
CTCAGGAGTATAGTAAGTTAATCTGTAATCTTTTACCCCTGCTTTAAATCCAGCACTTAT