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Detailed information on CNT30480890


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Arabidopsis halleriOryza sativa97.611.7892.62325forward
CNT30501657Arabidopsis halleriCoffea canephora1006.7796.1333forward
CNT30187493Arabidopsis halleriSecale cereale97.671.5993.54325forward
CNT30220178Arabidopsis halleriHordeum vulgare49.556.6895.76165forward
CNT30394625Arabidopsis halleriTriticum turgidum97.689.7893.23325forward
CNT30592620Arabidopsis halleriMusa acuminata73.5710.7795.92245forward
CNT30437037Arabidopsis halleriAegilops tauschii97.693.9392.31325forward
CNT30664530Arabidopsis halleriTriticum dicoccoides83.7877.9392.47279forward
CNT30598800Arabidopsis halleriFraxinus excelsior10089.5295.8333forward
CNT30228621Arabidopsis halleriAnanas comosus48.3538.790.06161reverse complement
CNT30207841Arabidopsis halleriHelianthus annuus96.712.0293.48322forward
CNT30685635Arabidopsis halleriTriticum urartu97.633.7593.23325forward
CNT30354619Arabidopsis halleriLactuca sativa10019.9994.29333forward
CNT30574571Arabidopsis halleriVitis vinifera49.552.6898.18165forward
CNT3056169Arabidopsis halleriAmborella trichopoda45.3541.4890.73151forward
CNT30100050Arabidopsis halleriOryza rufipogon48.3536.5990.06161reverse complement
CNT30115707Arabidopsis halleriOryza nivara97.67.4692.62325forward
CNT30557320Arabidopsis halleriPanicum hallii88.5966.4493.22295forward
CNT30335348Arabidopsis halleriCynara cardunculus93.0985.6493.23310forward

Expression of CNT30480890

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLLERHISNIEEFKLPTINELIIPFYEPYEHVLSHTP

>peptide 2 (64 aa)
SASASGRSNGARLVSARREIRNITNTGNRGIPDHICFCAMTISLELRGPTHISTVIRIRPIETS*

Sequence

>CNT30480890
TCAGCTTCCGCTTCTGGGAGATCAAACGGAGCTCGATTAGTTTCTGCTAGACGAGAAATAAGGAACATAACCAATACAGGGAACAGGGGAATACCAGACC
ATATCTGCTTTTGCGCCATGACAATCTCACTCGAATTACGGGGACCTACACATATTAGTACAGTAATAAGAATAAGACCAATAGAGACTTCATAAGAGAC
CATTTGAGCTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGAGTTCAAGTTACCAACAATCAACGAGTTGATCATACCCTTCTATGA
ACCGTACGAGCACGTCCTCTCTCACACCCCACC