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Detailed information on CNT30480469


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 8e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30114653Arabidopsis halleriEutrema salsugineum41.1933.9887.5264forward

Expression of CNT30480469

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSLGCSELGPKELGPKELVRKDLGPKELGPKELGP*

>peptide 2 (64 aa)
MHKRYRSSTLKTRRKPSVTNVEKNAERYRNVKVDAKNVSPKSSAETNRGVEVNQTLDERAAWLS*

>peptide 3 (29 aa)
MPRTLALRAVQRQIAASRSTKPWMSEQHG*

>peptide 4 (34 aa)
LKLAYMHAIINTVIILKRKMCVHVLCISDTAQAH*

Sequence

>CNT30480469
CTTAAACTTGCATACATGCATGCAATTATTAATACTGTAATTATTTTGAAGAGGAAAATGTGTGTGCACGTCCTATGCATAAGCGATACCGCTCAAGCAC
ATTGAAAACCAGACGGAAGCCTTCTGTTACAAACGTTGAGAAGAACGCTGAGAGATATAGGAACGTTAAGGTTGATGCCAAGAACGTTAGCCCTAAGAGC
AGTGCAGAGACAAATCGCGGCGTCGAGGTCAACCAAACCCTGGATGAGCGAGCAGCATGGTTGAGCTGATGGCTGTCCCAACTGCACGTTAAGTAGACCG
CTTAGGACATTTGCACATACACCGAGTCTAAGAGCATCGATAGGACAGTTTCTAGATGAGCCTGGGGTGCTCGGAGTTGGGACCGAAGGAGTTGGGACCG
AAGGAGTTGGTACGGAAGGACTTGGGACCGAAGGAGTTGGGACCGAAGGAATTGGGACCCTAGGAGTTGGGACCCTAGGACTTGGGCCCCTAGGACTGTG
CTTAGGACTTGGGTTGCATTTACAATCAGTAGCAACGGTTAAGGTGAAAAAAAGGATGTTGAGGGCAAAGAAAAGAGCAAGAGAGGCTGAGTTCTTTGAA
GCCATTGTTATTTTTCTTCAGTGTTTTAAGGATTATTGATT