Detailed information on CNT30480106


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHE8|PSAF_ARATH, E-value = 9e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371574Arabidopsis halleriArabidopsis thaliana71.330.7591.19159forward
CNT30540068Arabidopsis halleriBrassica napus35.8710.8893.7580forward
CNT30312957Arabidopsis halleriCamelina sativa67.7163.1894.04151forward
CNT30264705Arabidopsis halleriBrassica rapa35.879.5493.7580forward
CNT30611125Arabidopsis halleriArabis alpina69.5117.8281.29155forward

Expression of CNT30480106

Peptides detected in this lncRNA

>peptide 1 (64 aa)
EISATAGIGAERRMEERATAAEKAFMDCVRDLLDLGLRTRFVGIVSDIALFGFLEVSNSSWIFG*

>peptide 2 (58 aa)
DISDSWHRSREEDGRESDGGGESFHGLRERFVRSRVENEIRRDCERHRAFRVLGGFEF*

Sequence

>CNT30480106
GAGATATCAGCGACAGCTGGCATCGGAGCAGAGAGGAGGATGGAAGAGAGAGCGACGGCGGCGGAGAAAGCTTTCATGGATTGCGTGAGAGATTTGTTAG
ATCTCGGGTTGAGAACGAGATTCGTCGGGATTGTGAGCGACATCGCGCTTTTCGGGTTCTTGGAGGTTTCGAATTCTAGCTGGATCTTTGGGTGAAGTGT
GGAGAGAGGACTTATGGGAGGAG