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Detailed information on CNT30480070


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3085833Arabidopsis halleriVigna radiata22.5616.2286.6790reverse complement
CNT30539514Arabidopsis halleriBrassica napus24.064.185.4296forward
CNT3060146Arabidopsis halleriArabidopsis lyrata32.3326.3392.25129reverse complement
CNT3080286Arabidopsis halleriBrassica juncea26.0731.7187.5104forward
CNT30264067Arabidopsis halleriBrassica rapa26.0712.7386.54104forward
CNT30612022Arabidopsis halleriArabis alpina28.074.889.29112forward
CNT30349956Arabidopsis halleriEragrostis tef13.2820.4688.6853reverse complement

Expression of CNT30480070

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIFPCVLSSLTQFRQSLPGRSPIQKLLQPKHA*

Sequence

>CNT30480070
CTTGAAACTACTCCAGCCCAAGCACGCTTAACTGTGGAGTTCTCTCAGGATAGTTGACCGAAAAGATAAGTGCACTTTGGTGACATAGGTGGCCAAATCA
ATTCTTTTAAACCTCTCCGCATGCACCACCATATTCCTGAAACCGAGGTATTACAATTCTTGTAACGCCCCCGACCATCCTTACCAGTGGGCCCCACATC
CTCTCTCGGGCCCATGGGCCCACCCCTGTCCGACGGCCGGTCCGCTACGTCCGGGAGGCTTTAAAGACTTGTTTACCGACCCTACAAATCACCACATGAT
CTTTCCCTGTGTTTTGTCCTCACTCACACAGTTCCGACAATCACTTCCCGGAAGGTCACCCATCCAGAAACTACTCCAGCCCAAGCACGCTTAACTGTG