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Detailed information on CNT30479817


BLAST search results

BLAST vs Swiss-Prot:
sp|O22707|ALKR3_ARATH, E-value = 2e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316651Arabidopsis halleriCorylus avellana34.7826.0285.16128forward
CNT30700594Arabidopsis halleriQuercus lobata32.3433.8184.03119forward
CNT30501551Arabidopsis halleriCoffea canephora24.1819.7884.2789forward
CNT3070513Arabidopsis halleriQuercus suber33.4218.0682.93123forward
CNT3096605Arabidopsis halleriSolanum tuberosum22.8310.0486.984forward
CNT30586652Arabidopsis halleriMusa acuminata32.3413.3381.51119forward
CNT30543367Arabidopsis halleriBrassica napus72.0135.6790.94265forward
CNT3059952Arabidopsis halleriArabidopsis lyrata88.3296.7395.08325forward
CNT3076889Arabidopsis halleriBrassica juncea72.2861.2992.86266forward
CNT30451213Arabidopsis halleriSaccharum spontaneum26.0914.4882.2996forward
CNT30152051Arabidopsis halleriPrunus persica33.1515.5481.97122forward
CNT30570762Arabidopsis halleriVitis vinifera39.6735.1883.56146forward
CNT30704154Arabidopsis halleriPrunus avium33.1515.3582.79122forward
CNT3022456Arabidopsis halleriPopulus trichocarpa33.9717.9683.2125forward
CNT30114984Arabidopsis halleriEutrema salsugineum62.2379.5191.7229forward

Expression of CNT30479817

Peptides detected in this lncRNA

>peptide 1 (59 aa)
NHRFGQRNSQTVLHSIPRRQRWSVGVFEGWHCGHVSFSFHRLWLGNGLELRHLFWSEFH*

>peptide 2 (85 aa)
TIGLGRETHKQFYTAFQEDNGGVSEFLKVGTVAMYLSPFTDSGWAMVSSSDISSGVSFTDKAPMFWLRFSILVVPGMGQTSSPWW*

Sequence

>CNT30479817
AACCATAGGTTTGGGCAGAGAAACTCACAAACAGTTTTACACAGCATTCCAAGAAGACAACGGTGGAGTGTCGGAGTTTTTGAAGGTTGGCACTGTGGCC
ATGTATCTTTCTCCTTTCACAGACTCTGGTTGGGCAATGGTCTCGAGCTCAGACATCTCTTCTGGAGTGAGTTTCACTGATAAAGCTCCAATGTTCTGGT
TGAGGTTTTCGATCTTAGTGGTTCCTGGGATGGGGCAAACATCATCTCCTTGGTGGTGAACCCAGGCGAGGGCTAGTTGTCCGGGAGTGCATCCTTTCTT
CTCTGACATTGCACAAACCTTCTCATAGAGAATCTTGTTGTGGTCTAAGTTTTCCTGTTGGAATCTTG