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Detailed information on CNT30479816


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703860Arabidopsis halleriQuercus lobata12.6539.4885.05107forward
CNT3060034Arabidopsis halleriArabidopsis lyrata40.4394.4895.91342forward
CNT30129081Arabidopsis halleriCorymbia citriodora15.7225.5880.45133forward

Expression of CNT30479816

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKCKLKFSLGELYTLFILQGINTFIYFFIFYFYFFFH*

>peptide 2 (53 aa)
MLPYLSPFTTPGWAMASSSVISSGVSFTAKAPMFWLRFSILVVPGMGQTSSPW*

>peptide 3 (75 aa)
MQGLVARECTLSSPTLQKLSQRESCCGLSFPVGILVESAIRNRIEQINSELISKSSSIKQVIQRLCTCLSEVIIV*

Sequence

>CNT30479816
TTTTTTTTCCGAGAAAGTGGCTTTCCAGCCATTGTTCACCCGAATCCCGGTTTAATTAAACCAAACCGAAAATAACATATACTTATTTTTTAGAGTTTGG
TTACAATGTATGAAATGTAAATTGAAGTTTTCACTTGGGGAACTCTATACATTATTTATTCTTCAAGGCATTAACACATTTATTTATTTTTTTATTTTTT
ATTTTTATTTTTTTTTTCATTAACACATTTATTACCTTGATCTGACTGACATAAGTTAGACCACTTCAATGTCATGATGCACCACCACAACCATAGAAAC
TTCAACCGGCTTTAAGCGGCTTTCCAAGAAGACAACGGTGGAGTGTCAGAGTTCTTGAAAGTGGGTATCATGCTACCGTATCTTTCCCCTTTCACAACAC
CTGGTTGGGCAATGGCCTCAAGCTCAGTCATCTCTTCGGGTGTGAGTTTCACTGCTAAAGCTCCAATGTTTTGGTTGAGGTTTTCAATCTTAGTGGTTCC
TGGGATGGGGCAAACATCATCTCCCTGGTGATGAACCCATGCAAGGGCTAGTTGCGCGGGAGTGCACCCTTTCTTCTCCGACATTGCAGAAACTTTCTCA
AAGAGAATCTTGTTGTGGTCTAAGTTTTCCTGTTGGAATCTTGGTAGAGTCTGCAATAAGAAACAGAATTGAACAGATAAACAGTGAGTTGATTTCCAAA
AGTTCATCAATCAAACAAGTGATACAAAGGCTGTGTACTTGCCTTTCTGAAGTCATTATTGTCTAGGTTCTCAACAAGCTTCGGTCCTGATGCAAAGAAA
CCTCTTCCTAGAGGACTGTAAGCAACAATTCCAATCCCAAGTTCCC