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Detailed information on CNT30479805


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 1e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317005Arabidopsis halleriCorylus avellana26.3228.578580forward
CNT30380061Arabidopsis halleriManihot esculenta55.9245.0982.94170forward
CNT30630708Arabidopsis halleriVigna unguiculata34.2140.4787.5104forward
CNT30503251Arabidopsis halleriNicotiana attenuata78.6227.4781.17239forward
CNT30711848Arabidopsis halleriGlycine max48.3629.789.12147forward
CNT30544306Arabidopsis halleriBrassica napus94.0881.9593.01286forward
CNT30146071Arabidopsis halleriMedicago truncatula20.398.4490.3262forward
CNT3061832Arabidopsis halleriArabidopsis lyrata51.3250.8198.08156forward
CNT3077810Arabidopsis halleriBrassica juncea71.3834.8392.17217forward
CNT30264591Arabidopsis halleriBrassica rapa31.9114.5992.7897forward
CNT30216944Arabidopsis halleriKalanchoe fedtschenkoi41.1217.7680.8125forward
CNT30210701Arabidopsis halleriHelianthus annuus31.2510.8386.3295forward
CNT30321864Arabidopsis halleriAsparagus officinalis33.2221.8684.16101forward

Expression of CNT30479805

Peptides detected in this lncRNA

>peptide 1 (50 aa)
LESGSSLSSSSDDGKQVVSKRITEMLRKVLNRTFSGNISLDEETEHRKHG*

Sequence

>CNT30479805
CTTAGAGAGTGGGAGCTCTCTCAGCAGTTCCAGCGATGACGGTAAGCAAGTTGTTTCCAAAAGGATCACTGAGATGCTTCGCAAGGTTCTCAACAGGACC
TTCTCCGGTAACATAAGCTTGGATGAAGAAACCGAGCATCGCAAACATGGCTAATCTCCCGTTCTTGATCTCTTTGACCTTGAGAAGAGCTCCTTGATCA
GGGTCCTTAGCGAGTCCTAGAGGATCAAATGGACCTCCTGGGTGAGAACAACCTCAGCAACTACGGCGAGAACAAGGTTGATTGGGATGTTCTTGCCAAA
GTAG