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Detailed information on CNT30479769


BLAST search results

BLAST vs Swiss-Prot:
sp|P10053|RBS_PINTH, E-value = 6e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377290Arabidopsis halleriArabidopsis thaliana63.9154.8492.2487forward
CNT30235395Arabidopsis halleriBrassica oleracea24.5463.3993.05187forward
CNT30311891Arabidopsis halleriCamelina sativa24.5422.0895.19187forward
CNT3062126Arabidopsis halleriArabidopsis lyrata58.1443.2298.42443forward
CNT3075093Arabidopsis halleriBrassica juncea32.6830.3390.36249forward
CNT30261455Arabidopsis halleriBrassica rapa22.764.3190.75173forward
CNT30605275Arabidopsis halleriGossypium raimondii12.7332.0182.4797forward

Expression of CNT30479769

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQLTLPPLLAMEVMSLLALRVTGKAADDFKPVNGATMVA*

>peptide 2 (33 aa)
MNLLYLHAANSSPVACDGSNVVVGLAGDRESSG*

>peptide 3 (44 aa)
MIRDKGKVQCYYLQLEFNTRNPLVAEKVVNFLSQFDVSKVREVR*

Sequence

>CNT30479769
TTTTAAAAATCCGGTTATTGACTTATGTTTCTACCAATGAAAAGAAATAATAAAGGATGATTAGAGACAAAGGAAAAGTTCAATGTTATTACCTCCAACT
CGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCAGTAAGGTCAGGGAGGTAAGATAAAGTCTCAAA
CTTCTTCTTTCCGATTGGTGGCCACACCTATAATTCCCGAATCCAATTCCAATTATTCTATGTTTTGTTCAATTACACTAATTGCCATGACAAAAGACAT
CTTTCATTAATGAATTTACTTTACCTTCATGCAGCTAACTCTTCCCCCGTTGCTTGCGATGGAAGTAATGTCGTTGTTGGCCTTGCGGGTGACCGGGAAA
GCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGAGCCGGGGAGGTAACCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATCACTA
CGTCTTGTTGTTTCTCTTACTTTCCTGTTTGTCGATTGATTTGGTCATCTTTATATAGTGAGAACCGCAAGGCAAAAGCCCTAATGATCAAAGGGGCCAT
AATTCATGATAACGTTGTTAATTGCCACAGGATTAAGGAAAGGTGTTGACACCCTTATCAATTCGGACCACTAGGATAAGACCAAGTGGCAGAAAACTCC
ATAATCTTATCTTTCTCTTGTAGGGGAACGAGTGAATGTGTATGGCTACTGGTCTCCACTTG