Detailed information on CNT30479625


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677406Arabidopsis halleriSetaria viridis29.6117.2583.6798forward
CNT30314796Arabidopsis halleriCorylus avellana30.5114.784.16101forward
CNT30727836Arabidopsis halleriCorchorus capsularis21.4519.0987.3271forward
CNT30380779Arabidopsis halleriManihot esculenta54.3828.8981.67180forward
CNT30710712Arabidopsis halleriGlycine max26.8916.1283.1589forward
CNT30538767Arabidopsis halleriBrassica napus61.935092.2205forward
CNT30145300Arabidopsis halleriMedicago truncatula13.2920.1890.9144forward
CNT30664005Arabidopsis halleriTriticum dicoccoides22.3616.6386.4974forward
CNT30261343Arabidopsis halleriBrassica rapa61.9338.7594.15205forward
CNT307142Arabidopsis halleriZea mays29.917.9182.8399forward
CNT30610723Arabidopsis halleriGossypium raimondii45.9229.4681.58152forward
CNT30207455Arabidopsis halleriHelianthus annuus29.6114.8386.7398forward
CNT30684371Arabidopsis halleriTriticum urartu20.5418.5385.2968forward
CNT30365786Arabidopsis halleriSorghum bicolor29.9138.2282.8399forward
CNT30620107Arabidopsis halleriCajanus cajan28.76.8385.2695forward
CNT30570331Arabidopsis halleriVitis vinifera28.716.187.3795forward
CNT30319836Arabidopsis halleriAsparagus officinalis30.5112.6684.16101forward
CNT3037127Arabidopsis halleriCucumis melo21.4513.1785.9271forward
CNT30557232Arabidopsis halleriPanicum hallii29.9114.8982.8399forward
CNT30334895Arabidopsis halleriCynara cardunculus21.4517.4490.1471forward
CNT30724556Arabidopsis halleriLupinus angustifolius299.7384.3896forward

Expression of CNT30479625

Peptides detected in this lncRNA

>peptide 1 (31 aa)
AFYKHTLLGFLRLAFSCVFPELSQRIGFGSG*

>peptide 2 (81 aa)
LLQTYPPWLPQTRLLLCISRAEPANWLWLWLRECPEPPSRSLPCLPMSSSKCSARHVHRRRTRAMGSVPAGGILLRRSLRV*

Sequence

>CNT30479625
GCCTTTTACAAACATACCCTCCTTGGCTTCCTCAGACTCGCCTTCTCCTGTGTATTTCCCGAGCTGAGCCAGCGAATTGGCTTTGGCTCTGGCTAAGAGA
ATGTCCTGAGCCGCCTTCACGTTCTCTTCCCTGCCTCCCCATGTCTTCAAGCAAGTGTTCTGCAAGGCACGTGCATAGGAGAAGGACACGTGCCATGGGT
TCGGTGCCTGCGGGAGGGATTCTGTTGCGAAGGAGCTTGAGAGTGTAGGAAGCAACCTGCTCGGGAGTAGCTCTGTCTGTAGCCTCAGCTCCTGGAGTAA
CCATGCTCGGCTTCAGGAGAATACCTTCGAA