Detailed information on CNT30479543


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020893Arabidopsis halleriCitrullus lanatus22.887.1491.6119forward
CNT30193918Arabidopsis halleriSecale cereale40.5834.4285.78211forward
CNT30597171Arabidopsis halleriOryza meridionalis10.3823.0892.5954reverse complement
CNT30175657Arabidopsis halleriVigna angularis34.6237.8286.11180forward
CNT30336644Arabidopsis halleriCynara cardunculus95.3832.9681.25496forward

Expression of CNT30479543

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MCIRSPHHRWFSSARCHEMIENYDGVEIYLVLCIKKVLHDQNIQGGAHCR*

>peptide 2 (30 aa)
MSFKECLKVPLIRSDLETFLFIEGNRSWYP*

>peptide 3 (32 aa)
KAIRERILFYKLLPCAFALPIIDGSAAPGATK*

Sequence

>CNT30479543
AAAAAGCGATACGAGAACGTATTCTCTTCTATAAGCTTCTTCCATGTGCATTCGCTCTCCCCATCATAGATGGTTCAGCAGCGCCCGGTGCCACGAAATG
ATTGAGAACTACGACGGGGTCGAAATTTATTTGGTTCTTTGTATTAAAAAAGTATTGCATGACCAAAATATTCAAGGAGGGGCGCACTGCAGGTAGGGCC
CGTAGATAACTCGTCGGGCCGTCGGAGCGGGACTTATTTTGGAAAAAGAACTTGAATAACTTCGTTTTTCTGAAGGAGTCGTCATTTTCTATCTGGAACG
CTATGTCCTTTAAAGAATGCTTGAAGGTCCCGCTGATCCGAAGTGATTTAGAAACATTCTTATTTATCGAGGGTAATCGGTCATGGTATCCATAGCGTTG
GTTTTTTTTCCGGCCAACCCCGGATTTCGTTTTGCTTCTTTCGGTCGTTGAGCATGATCGACTCGACTCTTTTCCTTGCCCCATGACCTCTCACTTCGTT
TCGTTCTTCTTCTTTATCGT