« Back to Arabidopsis halleri search


Detailed information on CNT30479309


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M591|CRD1_ARATH, E-value = 3e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524694Arabidopsis halleriPhaseolus vulgaris25.4540.5782.46114forward
CNT30311334Arabidopsis halleriCamelina sativa62.0593.2993.88278forward
CNT30264426Arabidopsis halleriBrassica rapa44.4238.287.44199forward
CNT30620290Arabidopsis halleriCajanus cajan25.6738.4684.35115forward
CNT30115390Arabidopsis halleriEutrema salsugineum30.5825.4694.89137forward

Expression of CNT30479309

Peptides detected in this lncRNA

>peptide 1 (92 aa)
PGMPCFISGHKREDLGHNRELNKDLSERSLQFVCSFFKLFVPHEMCLIVIGLELLKQSHELFLVKKRLLNLFLRPLLGFRGGGGRRRRRGSG*

>peptide 2 (46 aa)
PACLASSLDIREKISATTGNSTKICRRGPCNLSAASLNSLFLTKCV*

Sequence

>CNT30479309
CCCGGCATGCCTTGCTTCATCTCTGGACATAAGAGAGAAGATCTCGGCCACAACAGGGAACTCAACAAAGATCTGTCGGAGAGGTCCCTGCAATTTGTCT
GCAGCTTCTTTAAACTCTTTGTTCCTCACGAAATGTGTCTGATTGTAATCGGTCTTGAACTCTTGAAGCAGAGCCACGAACTCTTCCTCGTTAAGAAGCG
ACTCCTGAATCTCTTTCTTCGTCCCCTTCTTGGATTTCGAGGTGGCGGAGGCCGGAGGAGGCGGCGAGGAAGTGGCTGACATTCTGATCACGGTGGAGAA
ACGTCGGCCGGAGAGGTATTTGCTCGGGTTTGAGAGCTTTGGGGAAGTGAATTTGGAGATGGGTTTCACTAACGCCATTTCAGCCGCCATTGATTGTGAG
TTGCAGAAGCAAAGAGAGTGAGATAGAGAGCAAAGCAGCTAGAGGAAG