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Detailed information on CNT30479174


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08733|PIP13_ARATH, E-value = 3e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546615Arabidopsis halleriIpomoea triloba11.0721.9388.1459forward
CNT30374824Arabidopsis halleriArabidopsis thaliana42.448.594.69226forward
CNT30281447Arabidopsis halleriChenopodium quinoa31.7135.4379.29169forward
CNT3082727Arabidopsis halleriBrassica juncea83.4994.4884.72445forward
CNT30612661Arabidopsis halleriArabis alpina31.5258.1388.69168forward
CNT30120512Arabidopsis halleriCitrus clementina15.5727.7685.5483forward

Expression of CNT30479174

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RNVGVSGTTFGVSGREDGVDKNESTNDLCR*

>peptide 2 (49 aa)
MYNMALGNDTLRAKNSPSDTEDSNSAAVYPAGLSIGLNLVTDDSQNGDV*

Sequence

>CNT30479174
CCGGAACGTGGGAGTCTCTGGCACTACGTTTGGGGTCAGTGGCAGAGAAGACGGTGTAGACAAGAACGAAAGTACCAATGATCTCTGCCGCTAGACCGGT
CCCTGTGCTGTAGCCATCGGCAAGAGAGTTGGCTCCACCGCCGTAACGGTCATAGTAAGAGCTTTGGAAGGCTTTGACAAATCCAACTCCACAAATCGCA
CCCAAACACTGAGCCACAATGTACAATATGGCCCTAGGCAACGACACTTTACGTGCCAAGAATAGCCCAAGCGATACCGAGGATTCCAACTCCGCCGCAG
TCTACCCCGCCGGCCTTAGTATCGGACTGAATCTTGTAACCGATGACAGTCAAAACGGTGATGTATAAGAAGAGGAGAGTAGCTACGAACTCGGCGATGA
CTGCTCTGTAAAAAGACCACTTCTTTAGCTCCGCTCCATCAATAAACGGAGCTGGCGGCGGATCATGATAGTCTCTTGTCTGAAATCCTTCTCCGGGAAC
GGCTTCCACATCCTTCGCCATATTTAGCTTCTT