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Detailed information on CNT30479087


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Arabidopsis halleriSetaria viridis66.3225.9488.08193forward
CNT30640184Arabidopsis halleriNymphaea colorata34.7113.3488.12101forward
CNT30512774Arabidopsis halleriJuglans regia66.6715.5485.05194forward
CNT30373037Arabidopsis halleriArabidopsis thaliana73.8810.5584.65215forward
CNT3019595Arabidopsis halleriCitrullus lanatus63.5733.3384.32185forward
CNT30728649Arabidopsis halleriCorchorus capsularis56.3615.0683.54164forward
CNT30405829Arabidopsis halleriBeta vulgaris61.8621.7984.44180forward
CNT30636551Arabidopsis halleriCapsicum annuum63.9228.1884.95186forward
CNT30224330Arabidopsis halleriHordeum vulgare33.6820.2987.7698forward
CNT30510528Arabidopsis halleriSolanum lycopersicum60.8213.7484.75177forward
CNT30441049Arabidopsis halleriAegilops tauschii24.418.7888.7371forward
CNT30665536Arabidopsis halleriTriticum dicoccoides67.729.8982.23197forward
CNT30309902Arabidopsis halleriCamelina sativa34.718.9189.11101forward
CNT30263812Arabidopsis halleriBrassica rapa63.5727.2188.11185forward
CNT30612239Arabidopsis halleriArabis alpina72.858.0785.85212forward
CNT30448454Arabidopsis halleriSaccharum spontaneum66.6710.5286.6194forward
CNT3015244Arabidopsis halleriZea mays48.4550.7289.36141forward
CNT30716450Arabidopsis halleriMalus domestica golden33.6816.9389.898forward
CNT30361875Arabidopsis halleriSorghum bicolor66.6717.5986.6194forward
CNT30705326Arabidopsis halleriPrunus avium33.687.6391.8498forward
CNT3024028Arabidopsis halleriPopulus trichocarpa38.8315.2988.5113forward
CNT30557952Arabidopsis halleriPanicum hallii66.6723.886.6194forward

Expression of CNT30479087

Peptides detected in this lncRNA

>peptide 1 (53 aa)
VLCTLLIYKSFFSPGTKLGPMILTFIPEATFPEKTRPKAKNLPLSDAGIILDT*

Sequence

>CNT30479087
GTCCTCTGCACACTCTTGATATATAAATCCTTCTTTTCACCAGGGACAAAGTTGGGACCCATGATCCTGACTTTCATACCAGAAGCCACCTTTCCAGAGA
AGACACGACCAAAGGCAAAGAACCTGCCCTTGTCAGATGCAGGAATCATCTTAGACACATAGAGCATGAGAGGTCCTTCGGGATCACAGTTTCTGATCGC
AGTGGCGTACTGATCTCGAAAAAGTTCTCACCCCAAAGCCTCTCCATCATTTCTTTTCGTCAACCCCAAACTTGTAAGCATACATCTTAGC