Detailed information on CNT304788


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7G794|LOX3_ORYSJ, E-value = 2e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224984Zea maysHordeum vulgare15.9426.0488.4169forward
CNT30247547Zea maysAvena sativa58.4327.5984.19253forward
CNT30454858Zea maysSaccharum spontaneum20.3234.1188.6488forward
CNT30683236Zea maysTriticum urartu22.6324.0883.6798forward
CNT30344859Zea maysEragrostis tef53.8135.284.98233forward
CNT30361402Zea maysSorghum bicolor19.430.5585.7184forward

Expression of CNT304788

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTEDISNAYWRGKTVVSKMPPALTSIWRALELMFMVSR*

Sequence

>CNT304788
TCTTGATTAGGTCGTCAGGGAGAGCCTGCTCTGTGAAGTTCCAGTCCTTGTAGATGACGGAGGACATCTCGAACGCGTACTGGCGCGGGAAGACGGTGGT
CTCGAAGATGCCGCCGGCGTTGACGAGCATCTGGCGCGCGTTGGAGTTGATGTTCATGGTGTCACGGTAGTGCGGCAGGAGGAGCTTGTGCACGGGGTGC
GTCACGCTGAGCTGCCGGTTGGTGGCGATCACGAACGGCTCCATCACGGCGTGGGTGCCACACCCACGCCTCCGCGCCGGTGGTCGACTTGGGCGTGTAC
ACGGTGCTCTTGGCGGTGGTCAGGCCGTCCCGGAGCTCGGGCAGGCTCAGCTCGATGGCCACCGGCACCAGCGTGCCGTCGCCGCGCAGGAACAGCACGG
TCCTGGTGGCGTAGATGAAGTTGCCCTCCAGGC