Detailed information on CNT30478271


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FK62|SAU24_ARATH, E-value = 3e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378892Arabidopsis halleriArabidopsis thaliana65.8636.9886.89328reverse complement
CNT30542807Arabidopsis halleriBrassica napus26.7165.5289.47133forward
CNT30234281Arabidopsis halleriBrassica oleracea26.9159.2992.54134forward
CNT3074121Arabidopsis halleriBrassica juncea69.8861.8188.51348forward

Expression of CNT30478271

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKAGLNMRLALNISSSGPGFRRRTPQETPLVLKLSFCL*

>peptide 2 (66 aa)
MASTFKTFRIFFFTRKRKKKNKILYLQRTSFFFSRKNQMLDNHHWSREVTLMKVSSGQGIVKPPIG*

>peptide 3 (57 aa)
SCLLNKKWHPLSKLLEFFFLQEREKRKTKSSIYKEQVFFFPGRTKCWIIIIGAEKLH*

Sequence

>CNT30478271
ACTCGTGTCTATTGAATAAAAAATGGCATCCACTTTCAAAACTTTTAGAATTTTTTTTTTTACAAGAAAGAGAAAAAAGAAAAACAAAATCCTCTATTTA
CAAAGAACAAGTTTTTTTTTTTCCCGGAAGAACCAAATGTTGGATAATCATCATTGGAGCCGAGAAGTTACATTGATGAAGGTATCTTCAGGACAAGGGA
TCGTTAAGCCACCCATTGGATGATCGAATCCAAACTCTTCCTCGGATTTACTAAGAAGAGCTTGAAATGAAGGCTGGTTTAAATATGAGATTGGCACTAA
ATATCTCTTCTTCTGGACCTGGTTTTCGCCGACGTACACCGCAAGAAACCCCTCTGGTGCTGAAATTGTCCTTTTGCTTGTAGCCTCTACAGAAAAGCCG
ATAATCTTCTTTGCACCCAAGATACCTCTGTAGAAAGTCATTTCTTGTTTCTGGAAAATCTAAATTTGAAGCTTCTGATAAAGGGTAGAGCAGATTCA