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Detailed information on CNT30478263


BLAST search results

BLAST vs Swiss-Prot:
sp|O50008|METE1_ARATH, E-value = 2e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377828Arabidopsis halleriArabidopsis thaliana100100.2995.95346forward
CNT30404182Arabidopsis halleriBeta vulgaris31.520.9283.49109forward
CNT30711924Arabidopsis halleriGlycine max23.714.9491.4682forward
CNT30224666Arabidopsis halleriHordeum vulgare16.1825.2387.556forward
CNT30563287Arabidopsis halleriActinidia chinensis21.6816.1686.6775forward
CNT30555741Arabidopsis halleriOryza glaberrima13.5821.2791.4947forward
CNT30312764Arabidopsis halleriCamelina sativa63.8758.6294.57221forward
CNT30264951Arabidopsis halleriBrassica rapa40.7541.9694.33141forward
CNT30129112Arabidopsis halleriCorymbia citriodora20.8119.3588.8972forward
CNT30619828Arabidopsis halleriCajanus cajan20.2319.349070forward
CNT30597221Arabidopsis halleriOryza meridionalis13.5821.9689.3647forward
CNT3027096Arabidopsis halleriPopulus trichocarpa32.6632.4784.96113forward
CNT30104583Arabidopsis halleriOryza rufipogon13.5822.1793.6247forward
CNT30578474Arabidopsis halleriOryza barthii13.5823.591.4947forward
CNT30118059Arabidopsis halleriOryza nivara18.2121.585.7163forward
CNT30333329Arabidopsis halleriCynara cardunculus30.9222.1184.11107forward
CNT3049510Arabidopsis halleriCucumis sativus37.8632.4386.26131forward

Expression of CNT30478263

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKLGSCMPQQGYQRSRSRQEHSNQKEWIQVQHRHQ*

>peptide 2 (62 aa)
SSACKVLRDAAKSLAQMFLPSTTPAKRYFPSGKPALTKSRVLAVTPFNEVRVLYASAGISAK*

>peptide 3 (47 aa)
KCLQGAERRSKVIGPDVPSINNTSKEVLSLREACLDQIKGLGSHTLQ*

Sequence

>CNT30478263
TCAAGTGCCTGCAAGGTGCTGAGAGACGCAGCAAAGTCATTGGCCCAGATGTTCCTTCCATCAACAACACCAGCAAAGAGGTACTTTCCCTCAGGGAAGC
CTGCCTTGACCAAATCAAGGGTCTTGGCAGTCACACCCTTCAATGAAGTTAGGGTCTTGTATGCCTCAGCAGGGATATCAGCGAAGTAGGTCTCGACAAG
AACATTCAAACCAGAAAGAGTGGATTCAAGTTCAGCATAGGCACCAGTAAAGGCCTGGAGTTTGTGACCCTCAAGATCCATAACAAGGACAGGCTCGTCA
AGCTGAATCCAGGTGGCACCAGCTGCCTTAAGCTCGGTAATCACTT