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Detailed information on CNT30478245


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Arabidopsis halleriCoffea canephora6.662597.5381reverse complement
CNT30403020Arabidopsis halleriBeta vulgaris6.1727.4710075reverse complement
CNT30611088Arabidopsis halleriArabis alpina6.7424.1996.3482forward
CNT30653503Arabidopsis halleriRosa chinensis628.8510073reverse complement
CNT30205405Arabidopsis halleriHelianthus annuus632.8810073reverse complement

Expression of CNT30478245

Peptides detected in this lncRNA

>peptide 1 (48 aa)
EIRLSPPELWDQFRLLREVSRSLEDQWSVMRLFYLCGSFFVNLDAYST*

>peptide 2 (40 aa)
MQKFILEGLPFEASIGDEAGNMQIYCRICKCCSSGWNIML*

>peptide 3 (68 aa)
MKLAKCRNLFLRVYLLRLLLVMKLATCKSIVGSASVVPLVGILCYKRVFTPSNVLWQSTVTVNAHCYL*

>peptide 4 (63 aa)
MWKPYFGDTPVPLVRFQKLILKDDDVSNHNYICWPTSLDSRDPKPHTEKVYCVTFFRFLRSSV*

>peptide 5 (34 aa)
MFKSVFLLHDVKAKLNLDVFGELYEVYWLKRLIY*

>peptide 6 (30 aa)
MTMSPIITTFVGQLPLTPGTLNHIPRRSIV*

Sequence

>CNT30478245
GAGATTAGATTGAGTCCACCTGAATTGTGGGATCAGTTTCGTCTTCTGCGCGAGGTTTCGCGGAGTTTGGAGGATCAGTGGAGCGTGATGCGTTTGTTCT
ACTTATGTGGCTCATTCTTTGTGAACCTGGATGCTTACAGTACATGATGGTCCTCTCTATATGAAGGGTACTGGTTAAAAAGATTTATTGATGGGACGTG
ATATAGCGATCTGCGATAAAACTAGGACTTAATAGAGATCTGATTTCCGAGGCAATTGTCTGCTTGAATTTAGAGCAACTACGTATAAAAAGTCAATGGG
GCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGTAGTTGAATGTCCCCATTGAAGCATTGTG
TGGTTGTGTAATCCTGTGGAAAAGAGAATTCATACTCCACTCCGTTATTACAGGAAATTTAGCCTTGGGGGTTTCTTTACCTTTTGAGGATTATATTTGT
GATGAAGCTGGCAAAATGCAGAAATTTATTCTTGAGGGTTTACCTTTTGAGGCTTCTATTGGTGATGAAGCTGGCAACATGCAAATCTATTGTAGGATCT
GCAAGTGTTGTTCCTCTGGTTGGAATATTATGTTATAAAAGAGTGTTCACTCCATCGAATGTGTTGTGGCAAAGTACAGTTACTGTAAATGCCCACTGTT
ATCTTTGAAGAATAGGAAGGGAAGGACAACCTTAAATGGAAAACAATTCCTAGCTGGAACTTAAATAGTTCACTTACAAAGTTAATGGGGCATTCCGAGA
ATCAAAACTCCGAGAAATTGGCAGAATTCAGCTAGCGATGTTTAAAAGTGTTTTCTTGCTGCACGACGTGAAAGCCAAGCTCAATCTTGATGTATTTGGC
GAACTGTATGAAGTTTACTGGTTAAAAAGACTAATATACTAATTGGACGTGAAACAACGAAGGGAGGTGTTTCTATTTGAAGAGATCAAAGTTATTAGAT
GTGGAAGCCATACTTTGGTGATACACCAGTTCCCTTGGTTAGGTTTCAGAAGTTGATCTTGAAAGATGACGATGTCTCCAATCATAACTACATTTGTTGG
CCAACTTCCCTTGACTCCAGGGACCCTAAACCACATACCGAGAAGGTCTATTGTGTGACATTCTTCAGGTTCTTAAGGAGCTCGGTATAAAGAGGGAAGA
AAGCAAGCATCATTGA