Detailed information on CNT30478109


BLAST search results

BLAST vs Swiss-Prot:
sp|P49040|SUS1_ARATH, E-value = 4e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377308Arabidopsis halleriArabidopsis thaliana95.1853.2697.89237forward
CNT30500405Arabidopsis halleriCoffea canephora59.4429.8482.43148forward
CNT3061548Arabidopsis halleriArabidopsis lyrata99.230.1698.79247forward
CNT30610552Arabidopsis halleriGossypium raimondii56.2221.8186.43140forward
CNT30713351Arabidopsis halleriMalus domestica golden55.023181.75137forward
CNT3023679Arabidopsis halleriPopulus trichocarpa58.6325.9385.62146forward

Expression of CNT30478109

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MWKPDLPCTMISAGPPLQVAKVGNPQVMASTTVNPKASYNAGCTN

Sequence

>CNT30478109
CAATCCTCTGAAGCCCTCCTTTTGAGATCTCATCCCAGTGAGATGGATCCTCCTTACACTTGGTGAAGAAATCAGCAAGAGTATCAGCAGCCTGATTACC
ATGGTAAGGGTCAATGTGGAAACCCGATTTACCGTGCACAATGATCTCAGCTGGACCACCTTTGCAAGTGGCGAAAGTCGGTAATCCACAAGTCATGGCC
TCCACAACAGTCAACCCAAAGGCTTCATACAATGCAGGTTGCACAAATG