Detailed information on CNT30478064


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546130Arabidopsis halleriIpomoea triloba14.5622.5591.346forward
CNT30375125Arabidopsis halleriArabidopsis thaliana51.5835.7596.93163forward
CNT30525458Arabidopsis halleriPhaseolus vulgaris28.164.9185.3989forward
CNT30708469Arabidopsis halleriGlycine max28.166.6185.3989forward
CNT30311330Arabidopsis halleriCamelina sativa48.7358.3392.86154forward
CNT3037521Arabidopsis halleriCucumis melo25.3212.683.7580forward

Expression of CNT30478064

Peptides detected in this lncRNA

>peptide 1 (96 aa)
INLIWVQKVSSLRIKARSPRQNTGFHKSVFHYTVFLIHIKLIRYIFLFLHSLVERDNNIANVVVPWIRQGQMRLQVSCLTPWYRCPFLSLHPVSIS*

>peptide 2 (39 aa)
MDPPRSNAPPGKLLDPLVPLPIPEPSPSFHILMLLVPKSQ

>peptide 3 (36 aa)
KLTLFGFKRFHHLELKLDHQDKIQVFTNLSFITQCF*

Sequence

>CNT30478064
AAATTAACCTTATTTGGGTTCAAAAGGTTTCATCACTTAGAATTAAAGCTCGATCACCAAGACAAAATACAGGTTTTCACAAATCTGTCTTTCATTACAC
AGTGTTTTTGATACACATAAAGCTCATAAGGTACATATTTCTATTTTTACATTCATTAGTTGAAAGGGATAACAATATCGCCAATGTTGTTGTGCCATGG
ATCCGCCAAGGTCAAATGCGCCTCCAGGTAAGTTGCTTGACCCCCTGGTACCGCTGCCCATTCCTGAGCCTTCACCCAGTTTCCATATCCTAATGCTTCT
GGTACCAAAATCCCAG