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Detailed information on CNT30478045


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LSY5|U71B7_ARATH, E-value = 3e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378828Arabidopsis halleriArabidopsis thaliana99.7625.8780.62418forward

Expression of CNT30478045

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSDETSYSRIRKNGYLWSPSNHFSYIFCPIKESFRENFL*

>peptide 2 (34 aa)
STIKKALNFCSAYNGHAAVGTPNQRLSSVEFHPQ*

Sequence

>CNT30478045
CTCCACCATCAAGAAAGCGTTGAACTTCTGTTCTGCGTATAACGGCCATGCAGCTGTTGGAACACCAAACCAAAGACTCTCTAGCGTCGAATTCCATCCA
CAATGAGTGACGAAACCTCCTATAGCCGGATTCGAAAGAACGGCTACCTGTGGAGCCCATCCAATCACTTTTCCTATATCTTTTGTCCGATCAAAGAATC
CTTCCGGGAGAACTTCCTCTAGATTTGTAAACTCTCTTGGAGGTTCTTTAAATATATTCGGAGATGCACGACGGAGAGACCAGAGAAACCGGTGGCCACT
TCGCTCTAGGGCTATTGCGATTTCTCTTACTTGTTCCTTATTGAAGCCTCCCATGCTCCCAAAGCAAAGAAACACAACCGAACTAGGTGGTTGCTCATCT
AACCACTGTAAAATCTCCG