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Detailed information on CNT30477981


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378220Arabidopsis halleriArabidopsis thaliana10.9632.9286.67105forward
CNT30544944Arabidopsis halleriBrassica napus23.4925.7486.67225forward
CNT30614256Arabidopsis halleriArabis alpina27.3550.3889.31262forward

Expression of CNT30477981

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MLACFAALVRRFCLFFIYPLLVWFAIFGVCLCSALFQGNLSTDILSITILSLLPAQGVT*

>peptide 2 (58 aa)
MVGRNVDFLEFINLCWRKLFRHLFVQTFYYRLQKLVMSCNRSELIPITQCSTVLCTFM*

>peptide 3 (39 aa)
MMSLQGTITSGPKHSSEAVPITVVCHISWLEGMWIFWSL*

>peptide 4 (74 aa)
MKFWGGFLVIVGSISFIGFVFVAIVSKLFPLSDNPIIQAIQNDRYYCFLAPLTLPALLVAVYFHWLSMKLFKHA*

Sequence

>CNT30477981
GAAGACATTAGTTTGCTGGTTCGGACATGTTTGAGATTAAACCGGTTTGACTGAGTCCGATTTGGGTAAAATTGATGGTTTAGCGATTTTAATATGCTGG
CTTGTTTTGCCGCTCTGGTTCGCCGGTTTTGTCTCTTCTTCATCTACCCTCTTCTTGTTTGGTTTGCGATCTTCGGTGTCTGTCTCTGCTCTGCTCTCTT
TCAGGGGAATCTCTCAACCGATATCCTCTCAATCACTATATTATCTCTGTTACCGGCACAAGGAGTTACATGATGCTACTTGGACTGTTACAGAGACTGC
TTGAATGAAACATTGAGAATTTTGGGGGTCTTGAGAATGAAGTTTTGGGGAGGCTTTTTAGTGATCGTTGGTTCCATTTCCTTCATTGGATTTGTGTTTG
TAGCTATAGTCTCCAAATTGTTTCCACTCTCTGACAATCCCATTATCCAAGCTATTCAGAATGACAGGTACTACTGCTTCTTGGCTCCACTGACTCTACC
TGCTCTTCTGGTTGCTGTCTACTTTCATTGGCTTAGTATGAAGCTCTTCAAGCACGCATGATACATCTCACGTAGCAACATCTTACTCCAAGTTGCATAT
GATGTCTTTGCAGGGAACAATAACATCTGGTCCGAAGCATTCTTCTGAGGCTGTTCCGATCACAGTTGTTTGTCACATCTCATGGTTGGAAGGAATGTGG
ATTTTCTGGAGTTTATAAACCTCTGTTGGAGAAAGCTGTTCAGGCATCTTTTTGTTCAGACTTTTTATTACAGACTCCAAAAGCTGGTGATGAGTTGTAA
TCGTTCAGAACTCATACCAATTACTCAATGTTCAACAGTTTTGTGTACATTCATGTGAAGTTACTTTCACATTGACATCAAACCAAGAAAGATAAGGAAA
ATAAATGTTAGATGAATTGACTGTTGCATTCTGATGAAAGTCTGGGGAGAGACAGCAG