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Detailed information on CNT30477972


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71T45|H32_EUPES, E-value = 1e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315797Arabidopsis halleriCorylus avellana99.4252.0480.81344forward
CNT30547549Arabidopsis halleriIpomoea triloba10044.781.5346forward
CNT30698248Arabidopsis halleriQuercus lobata10047.482.08346forward
CNT30267640Arabidopsis halleriChenopodium quinoa98.8447.1181.29342forward
CNT3069242Arabidopsis halleriQuercus suber99.4264.1881.69344forward
CNT30380641Arabidopsis halleriManihot esculenta10050.0782.37346forward
CNT30200890Arabidopsis halleriPisum sativum10056.2683.24346forward
CNT30709007Arabidopsis halleriGlycine max56.9482.7781.73197forward
CNT3048083Arabidopsis halleriPrunus dulcis77.7538.3282.16269forward
CNT30168718Arabidopsis halleriPistacia vera25.725.8283.1589forward
CNT3090157Arabidopsis halleriSolanum tuberosum73.1239.2282.21253forward
CNT30565750Arabidopsis halleriActinidia chinensis95.0929.9479.94329forward
CNT3084175Arabidopsis halleriVigna radiata10033.2181.79346forward
CNT30508643Arabidopsis halleriSolanum lycopersicum99.4244.7382.56344forward
CNT30255419Arabidopsis halleriAvena sativa31.7920.6481.82110forward
CNT30309861Arabidopsis halleriCamelina sativa51.7328.8786.59179forward
CNT30259840Arabidopsis halleriBrassica rapa58.6770.2484.73203forward
CNT30613891Arabidopsis halleriArabis alpina56.3648.3988.72195forward
CNT30465278Arabidopsis halleriSaccharum spontaneum15.6126.3488.8954reverse complement
CNT30609694Arabidopsis halleriGossypium raimondii10045.1781.79346forward
CNT30206821Arabidopsis halleriHelianthus annuus32.3718.7382.14112reverse complement
CNT30358481Arabidopsis halleriLactuca sativa97.436.7983.38337forward
CNT30414942Arabidopsis halleriPapaver somniferum10042.5683.24346forward
CNT30644610Arabidopsis halleriCannabis sativa63.8748.0487.33221forward
CNT3053477Arabidopsis halleriAmborella trichopoda97.6953.9981.66338forward
CNT30329187Arabidopsis halleriDioscorea rotundata20.5218.384.5171forward
CNT3051266Arabidopsis halleriCucumis sativus10046.1383.53346forward

Expression of CNT30477972

Peptides detected in this lncRNA

>peptide 1 (87 aa)
LGVNRAKISILKKPNKISLSCFLKSRHSTALEPQIRLEILSNLTNQSLERKLTDQKLSTLLILPDFSQRHSSWTESVWLLHSSGCWS*

Sequence

>CNT30477972
CTCTTGGCGTGAATCGCGCAAAGATTAGTATCCTCAAAAAGCCCAACAAGATAAGCCTCAGCTGCTTCCTGAAGAGCCGCCACAGCACTGCTCTGGAACC
TCAGATCCGTCTTGAAATCTTGAGCAATCTCACGAACCAATCTCTGGAACGGAAGCTTACGGATCAAAAGCTCAGTACTCTTTTGATACTTCCTGATTTC
TCTCAACGCCACAGTTCCTGGACGGAATCTGTGTGGCTTCTTCACTCCTCCGGTTGCTGGAGCTGATTTCCTCGCTGCTTTGGTCGCGAGTTGCTTCCTT
GGAGCCTTTCCTCCGGTGGATTTGCGAGCTGTTTGCTTGGTACGAG