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Detailed information on CNT30477892


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 5e-162

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Arabidopsis halleriSetaria italica18.1325.8780.93194forward
CNT30530404Arabidopsis halleriEucalyptus grandis31.494.6581.85336forward
CNT30316147Arabidopsis halleriCorylus avellana37.2953.5680.95399forward
CNT30703138Arabidopsis halleriQuercus lobata35.1471.7684.04376forward
CNT30375121Arabidopsis halleriArabidopsis thaliana25.9838.0385.25278forward
CNT30499549Arabidopsis halleriCoffea canephora37.6682.2480.4403forward
CNT30615836Arabidopsis halleriSesamum indicum10.5629.585.84113forward
CNT30268105Arabidopsis halleriChenopodium quinoa37.4847.7979.8401forward
CNT3021247Arabidopsis halleriCitrullus lanatus35.8941.6983.07384forward
CNT30729539Arabidopsis halleriCorchorus capsularis37.0158.9384.34396forward
CNT3068683Arabidopsis halleriQuercus suber35.2376.6383.55377forward
CNT30524728Arabidopsis halleriPhaseolus vulgaris35.5170.3781.58380forward
CNT30486152Arabidopsis halleriOlea europaea22.4326.5280240forward
CNT30503775Arabidopsis halleriNicotiana attenuata34.0282.1781.32364forward
CNT30637312Arabidopsis halleriCapsicum annuum14.7736.7482.28158forward
CNT3091042Arabidopsis halleriSolanum tuberosum28.0482.1981.67300forward
CNT30182233Arabidopsis halleriSecale cereale20.7535.6979.73222forward
CNT30289293Arabidopsis halleriTriticum aestivum11.8741.7882.68127forward
CNT30223417Arabidopsis halleriHordeum vulgare19.5392.0781.82209forward
CNT30590847Arabidopsis halleriMusa acuminata25.9860.8379.5278forward
CNT3084565Arabidopsis halleriVigna radiata32.0620.382.8343forward
CNT30539234Arabidopsis halleriBrassica napus44.1151.5882.2472forward
CNT30508626Arabidopsis halleriSolanum lycopersicum22.972.4982.04245forward
CNT30143836Arabidopsis halleriMedicago truncatula36.9267.7581.77395forward
CNT30244810Arabidopsis halleriAvena sativa20.7527.4879.73222forward
CNT30261302Arabidopsis halleriBrassica rapa44.7792.6582.88479forward
CNT30447453Arabidopsis halleriSaccharum spontaneum17.131.9481.97183forward
CNT30131528Arabidopsis halleriLolium perenne15.3335.5783.54164forward
CNT3066796Arabidopsis halleriLeersia perrieri29.7281.7579.25318forward
CNT30653881Arabidopsis halleriRosa chinensis31.531.5582.79337forward
CNT30718631Arabidopsis halleriMalus domestica golden34.7764.8179.3372forward
CNT30341852Arabidopsis halleriEragrostis tef31.5924.4679.59338forward
CNT30595456Arabidopsis halleriOryza meridionalis29.7255.7979.56318forward
CNT30359656Arabidopsis halleriLactuca sativa37.5723.7981.34402forward
CNT30411763Arabidopsis halleriPapaver somniferum20.9319.8883.93224forward
CNT30570592Arabidopsis halleriVitis vinifera21.2170.2881.5227forward
CNT3055709Arabidopsis halleriAmborella trichopoda25.1441.1382.53269forward
CNT30325711Arabidopsis halleriAsparagus officinalis6.0720.3890.7765forward
CNT30580107Arabidopsis halleriEchinochloa crusgalli30.4762.8179.14326forward
CNT30497454Arabidopsis halleriDigitaria exilis29.7285.4880.82318forward
CNT30594668Arabidopsis halleriEragrostis curvula29.8194.6679.31319forward
CNT30604168Arabidopsis halleriOryza punctata14.3955.883.12154forward
CNT30174824Arabidopsis halleriVigna angularis28.532.1178.69305forward
CNT30337932Arabidopsis halleriCynara cardunculus19.8125.8583.96212forward
CNT30726386Arabidopsis halleriLupinus angustifolius20.0923.9285.12215forward
CNT3050773Arabidopsis halleriCucumis sativus22.3442.5382.43239forward

Expression of CNT30477892

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MWRWQCRRGRRRVSVLGACNGSDESLRTTALSASDNKIPLLVAPSRVAGMSAQTPSSSS

>peptide 2 (46 aa)
MRKQRGREGTDGINVAPVSLNLRMLKRISVDLTCTRQQESCSHSLR*

>peptide 3 (60 aa)
MYSMLAFFSIAGRYVRIPYPGSGSTSYGIGWLDDLEKIVNPNVAMAMPTRTKTSLCSRSM*

Sequence

>CNT30477892
CCAGCAACACAAATATGAAATATGGCTCAATCGACTAGTTCCGAAAGAAGAAAAAATCGACGAAAAACGGGGTTAAAATCGTCAAATTAGGAAGATAAAA
AAATATCCCCTGCGGGTGCCTCTAAGAAAGGGACACGTCTCAGAGCCGCACGATTATAGGACCCAACAACATCTACGCTTCAAATGGAACTTTGACCAGA
TCTCAAAAAAAGACACTCTGTTTTTCTCTGCTAACGTGCGCTTTATTGTTGTTATACCCTAGGGACAAACAAAATGAGGAAGCAGAGAGGGAGAGAAGGT
ACCGATGGGATTAACGTTGCCCCAGTAAGTCTCAACCTGAGGATGTTGAAGAGGATCTCCGTAGACCTCACTTGTACTCGTCAGCAAGAATCTTGCTCCC
ACTCTCTTCGCTAGCCCCAACATGTTCAAGGTTCCCACCACATTCGATATGATAGTCTTGACGGGATTGAATTTGTAGTGGACAGGAGAAGCAGGGCATG
CCAAATGGTAGATCTGATCAACCTCTAGGAGGATCGGCTCCACTACATCGTGACGGATCATTTCGAAATTAGGGTTACTGAAGTGGTGCATCACGTTCTC
TTTCCTTCCGGTGAAGAAATTGTCGACCACGATCACGTTATCTCCTCTCGCCATCAACCGGTCCACCAGGTGTGACCCGACGAATCCTGCTCCACCTGTC
ACAACCACCCTTAGCACTTTCCGTTTCAGGCCTAGAGGGATTTTGCCGCCTGCCGATCCGATCCGGCTCATGTACTCGATGCTCGCCTTCTTCTCAATCG
CCGGCAGGTACGTTCGCATTCCGTATCCGGGGAGCGGATCCACGTCGTACGGAATTGGCTGGTTGGATGATTTGGAGAAGATTGTGAATCCTAATGTGGC
GATGGCAATGCCGACGAGGACGAAGACGAGTCTCTGTTCTCGGAGCATGTAACGGATCGGACGAATCGCTACGAACCACGGCTTTATCGGCTTCGGATAA
TAAGATTCCGCTTCTGGTTGCTCCATCTCGTGTCGCCGGTATGTCAGCTCAGACGCCATCTTCTTCTTCT