Detailed information on CNT30477838


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3088000Arabidopsis halleriVigna radiata80.8240.8185.49455forward
CNT30541271Arabidopsis halleriBrassica napus10054.588.63563forward
CNT30233494Arabidopsis halleriBrassica oleracea96.0974.4288.17541forward
CNT30203004Arabidopsis halleriHelianthus annuus80.8239.7785.93455forward

Expression of CNT30477838

Peptides detected in this lncRNA

>peptide 1 (32 aa)
HHGDEGPSEGSTPSGCCSRPKCGHPQAVFQRR*

>peptide 2 (31 aa)
MVSELSTSKVIVFPVKVLTKICIPPRSLRTR*

>peptide 3 (55 aa)
TTETKDQVKGRLLLDVVVGQSAAILKLFSSEDETLLVRRNAFLVLDLGLHIVNGV*

>peptide 4 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSRVMVFPVRVFTKICIPPRRRKTK*

Sequence

>CNT30477838
CCACCACGGAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCGAAGATGA
GACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACTTCAAGGGTGATGGTCTTTCC
GGTGAGAGTCTTCACGAAGATCTGCATACCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCA
TCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAC
TCTCCACCTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATACCACCACGAAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTG
GATGTTGTAGTCAGCAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTG