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Detailed information on CNT30477828


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Arabidopsis halleriOryza sativa73.488.188.5374forward
CNT30678279Arabidopsis halleriSetaria viridis94.556.0686.9481forward
CNT30201083Arabidopsis halleriPisum sativum73.6717.5693.07375forward
CNT30181337Arabidopsis halleriSecale cereale73.4817.3989.84374forward
CNT30303870Arabidopsis halleriTriticum aestivum73.4841.3389.84374forward
CNT30225281Arabidopsis halleriHordeum vulgare43.8166.5789.69223forward
CNT30565170Arabidopsis halleriActinidia chinensis73.0832.5792.2372forward
CNT3089355Arabidopsis halleriVigna radiata58.3549.8390.24297forward
CNT30539441Arabidopsis halleriBrassica napus10010.4296.86509forward
CNT30239042Arabidopsis halleriBrassica oleracea70.1430.2597.48357forward
CNT30554212Arabidopsis halleriOryza glaberrima73.489.9288.5374forward
CNT30146680Arabidopsis halleriMedicago truncatula51.8721.0792.05264forward
CNT30444216Arabidopsis halleriAegilops tauschii50.2950.6988.28256forward
CNT30257373Arabidopsis halleriAvena sativa40.2830.8788.78205forward
CNT3059817Arabidopsis halleriArabidopsis lyrata79.7670.3698.28406forward
CNT3075230Arabidopsis halleriBrassica juncea20.247.8794.17103forward
CNT30265852Arabidopsis halleriBrassica rapa20.2423.5794.17103forward
CNT302912Arabidopsis halleriZea mays73.4846.6987.7374forward
CNT30682029Arabidopsis halleriTriticum urartu73.4835.4589.84374forward
CNT30355674Arabidopsis halleriLactuca sativa73.2850.5493.03373forward
CNT3058691Arabidopsis halleriAmborella trichopoda27.1130.8786.96138forward
CNT30323704Arabidopsis halleriAsparagus officinalis13.3622.995.5968forward
CNT30121217Arabidopsis halleriCitrus clementina62.4835.4590.88318forward
CNT30100001Arabidopsis halleriOryza rufipogon26.9253.188.32137forward
CNT30578317Arabidopsis halleriOryza barthii84.2888.6485.08429forward

Expression of CNT30477828

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MHYDRNSQFSGKYSSFDHFFACTRSSIQIMPFDFTCFSL*

>peptide 2 (36 aa)
MVGSSHSHHLWKNQVHHVDIHKQLFHSSSRITPILV*

Sequence

>CNT30477828
TTTACCTACTACTGTACCCGCGTGAATATGATCTCCACCAGATAGACGTAAAGCTTTAGCTAGTACACGGAAGTGCATACCATGATTCTTCTGTCTATCA
ATAACAGTGTGTATTGCACGGTGGATGTGAAGAAGTAGTCATGCATTACGATAGGAACTCCCAATTCTCTGGCAAATACAGCTCTTTTGATCATTTCTTC
GCATGTACCCGCAGTAGCATTCAAATAATGCCCTTTGATTTCACCTGTTTCAGCCTGTGATTTATAAATAGCTTCGGTACAAAATAAGAAACGGTCTCTC
CAACGCATAAATGGTTGGGAGTTCACATTCTCATCATCTTTGGAAAAATCAAGTCCACCACGTAGACATTCATAAACAGCTCTTCCATAGTTCTTCGCGG
ATAACCCCAATTTTGGTTTAATAGTACATCCTAATAGAGGACGTCCATACTTGTTCAATTTATCTCTTTCAACTTGGATACCATGAGGTGGTCCTTGGAA
AGTTTTAGT