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Detailed information on CNT30477824


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SA56|PSAD2_ARATH, E-value = 2e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377112Arabidopsis halleriArabidopsis thaliana91.8948.1196.73306forward
CNT30630495Arabidopsis halleriVigna unguiculata55.8632.880.65186forward
CNT30197643Arabidopsis halleriPisum sativum24.0236.0486.2580forward
CNT30710271Arabidopsis halleriGlycine max46.5531.1281.94155forward
CNT3089114Arabidopsis halleriVigna radiata61.2621.2180.39204forward
CNT30611231Arabidopsis halleriArabis alpina53.1530.7889.83177forward
CNT30215427Arabidopsis halleriHelianthus annuus27.0325.2183.3390forward
CNT30356274Arabidopsis halleriLactuca sativa59.1630.2182.74197forward

Expression of CNT30477824

Peptides detected in this lncRNA

>peptide 1 (54 aa)
FSSWIRLLWINTIFRMKILNLTIRKHSVKLLQQIRTFSHDRCTSCRHLKDLFFW*

Sequence

>CNT30477824
CTTCTCTTCCTGGATTCGCCTTCTCTGGATAAACACCATCTTTAGGATGAAGATATTGAACCTCACCATTAGGAAACACTCTGTAAAACTGCTTCAGCAG
ATTCGGACCTTCTCTCATGATCGCTGCACCTCCTGTCGGCATCTCAAAGATCTGTTCTTTTGGTGAGTTCCATGTAATAACGTAGAACTCTTCCACTTGT
GCTTTACGTAGAAGACCACCGGTGCTTCCCGCGAAGATCGGAGACGGTGTGTTTGGGTCTAGCTGCGGTGGCGTGAATCCCACGGGAGCTTCTTTCACGG
CGGGGGCTGCAGCGGCTTTGGAATCTGTTTTCT