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Detailed information on CNT30477817


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376617Arabidopsis halleriArabidopsis thaliana74.374.0988.3795forward
CNT30169886Arabidopsis halleriPistacia vera94.4958.6481.91011forward
CNT30636081Arabidopsis halleriCapsicum annuum85.4249.5482.82914forward
CNT3094992Arabidopsis halleriSolanum tuberosum86.1779.2183.19922forward
CNT3089455Arabidopsis halleriVigna radiata84.374.1882.71902forward
CNT30540600Arabidopsis halleriBrassica napus85.6153.6986.9916forward
CNT30235198Arabidopsis halleriBrassica oleracea77.4875.586.61829forward
CNT30312779Arabidopsis halleriCamelina sativa85.8977.1689.34919forward
CNT3061726Arabidopsis halleriArabidopsis lyrata43.0872.696.75461forward
CNT3077383Arabidopsis halleriBrassica juncea85.1470.2985.84911forward
CNT30262381Arabidopsis halleriBrassica rapa85.6157.1887.45916forward
CNT30612915Arabidopsis halleriArabis alpina60.0966.0289.27643forward
CNT30229037Arabidopsis halleriAnanas comosus85.2358.9983.77912forward
CNT30716337Arabidopsis halleriMalus domestica golden94.8681.9282.961015forward
CNT30624049Arabidopsis halleriDaucus carota94.1148.8882.821007forward
CNT30364985Arabidopsis halleriSorghum bicolor83.1886.7482.36890forward
CNT30704857Arabidopsis halleriPrunus avium95.0564.4183.381017forward
CNT30114619Arabidopsis halleriEutrema salsugineum85.1484.2787.71911forward

Expression of CNT30477817

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MKGRLLLDVVVSKGSAILQLLSGEDQPLLIRRNTLLILDLGLHVVDGVRTLHFKSNSFXR*

>peptide 2 (40 aa)
MVSELSTSRVIVFXVRVLTKICIPPRSLRTKWRVDSFWIL*

>peptide 3 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSRVMVFPVRVFTKXCIPPRSLSTK*

>peptide 4 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSRVIVLPVKVLTKICIPPRRRNTK*

>peptide 5 (44 aa)
MPSLSWILALTLSMVSELSTSRVMVFPVRVFTKICIPPRRRNTK*

Sequence

>CNT30477817
TTTTAAAAGAAACGAGACATGAACTTCTTTAACCATAACAGAGACGAGATTTAGAAACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGACTCCTTTT
GGATATTGTAGTCAGCCAAGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTT
GGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTAATGGTCTTCCCGGTCAGAGTCTTCACGAAARTCTGCATACCACCACGAAGCCTT
AGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGCCCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCG
GAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATCGTCTTGCCAGTCAAAGTCTTGAC
GAAGATCTGCATACCTCCACGGAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTTCTGCCATCCTCCAACTGCTTT
CCGGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAACTCTCCACTTCAAGAG
TAATAGTTTTTYCCGTTAGGGTCTTGACGAAAATCTGCATACCACCACGGAGCCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGC
CAACGTGCGGCCATCTTCTAGCTGTTTTCCGGCGAAAATAAGCCTYTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCG
ATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCATACCTCCACGCAGACGTAACACCAAATGAAGGG
TAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAA