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Detailed information on CNT30477816


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30510145Arabidopsis halleriSolanum lycopersicum85.2748.3887.23689forward
CNT30311059Arabidopsis halleriCamelina sativa85.5254.7190.01691forward
CNT3074551Arabidopsis halleriBrassica juncea85.7776.5788.17693forward
CNT30260853Arabidopsis halleriBrassica rapa85.7777.1788.17693forward
CNT30613113Arabidopsis halleriArabis alpina85.5275.1988.28691forward
CNT30623574Arabidopsis halleriDaucus carota84.4149.7484.9682forward
CNT30359105Arabidopsis halleriLactuca sativa80.3244.1284.13649forward
CNT30425514Arabidopsis halleriPapaver somniferum77.9745.4287.14630forward

Expression of CNT30477816

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVIVFSVRVLTKICIPPRSLRTK*

>peptide 2 (66 aa)
MKGRLLLDVVVSKCSAILQLLSGEDQPLLIRRNALLILDLSLNVVDGVRAFHLKGDSLSGESLNEDL

>peptide 3 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSRVMVFPVKVFTKICIPPRRRNTK*

>peptide 4 (60 aa)
MKGRLLLDVVVSKGSAILQLLSGEDQPLLIRRNTLLILDLGLHVVDGVRTLHFKSNSFFR*

>peptide 5 (34 aa)
MPSLSWILALTLSMVSELSTSRVIVFPVRVLTKIC

>peptide 6 (40 aa)
RKHSSSIIYQELYKAPETQTTKVIKETRHENFLNHNRDKF*

Sequence

>CNT30477816
CGGAAACATAGTTCATCAATTATTTATCAGGAGCTTTACAAGGCCCCAGAAACACAAACCACCAAAGTTATAAAAGAAACGAGACATGAGAACTTCTTAA
ACCATAACAGAGACAAGTTTTAAAAACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGACCATC
CTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTC
TCCACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATCTGCATACCTCCACGGAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGGA
TGTTGTAGTCAGCAAGGGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCTTGGATCTTGGC
CTTCACGTTGTCGATGGTGTCAGAACTCTCCACTTCAAGAGTAATAGTTTTTTCCGTTAGGGTCTTGACGAAAATCTGCATACCACCACGGAGCCTGAGA
ACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAG
GAATGCCCTCCTTATCTTGGATCTTAGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAA
GATCTGCA