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Detailed information on CNT30477502


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523111Arabidopsis halleriSetaria italica23.8517.5584.3483forward
CNT30375740Arabidopsis halleriArabidopsis thaliana49.1426.6495.91171forward
CNT30729810Arabidopsis halleriCorchorus capsularis26.443.2584.7892forward
CNT30314174Arabidopsis halleriCamelina sativa40.2363.9393.57140forward
CNT3060266Arabidopsis halleriArabidopsis lyrata43.6826.997.37152forward
CNT30719439Arabidopsis halleriMalus domestica golden46.8423.7383.44163forward
CNT30705730Arabidopsis halleriPrunus avium45.1132.7881.53157forward
CNT3099734Arabidopsis halleriOryza rufipogon39.9419.4181.29139forward

Expression of CNT30477502

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDLATSWLSIGQVMWLITSHCYLRVSCTVH*

Sequence

>CNT30477502
GGGGTAAAAGAGTTGCATCATCACACCAACCATTAACTTATTAATTCTACAGGTAGACCACTCGAGTTTATTCAAAGCTACAACAGCAGCAAAGCAGAGA
GAGCGAGAGAGAGAGATCATTACTCAACATGCGCAGTGAGGTTAGGTTGTAAGGATTGGAGGCAGGTAGTCTGATTTGGTGTTCGTACCAGAGTGACATA
CGGAACCCATGGATCTGGCCACGAGCTGGTTGTCTATAGGACAGGTGATGTGGTTGATAACCTCCCATTGCTATCTCAGAGTCTCTTGCACCGTCCATTG
ACCTCTGGTTGATGTTAGCAGACCCGATAATAATATACTCATCGTCAA