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Detailed information on CNT30477439


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30309275Arabidopsis halleriCamelina sativa14.0737.9596.4785forward
CNT3060537Arabidopsis halleriArabidopsis lyrata45.8626.4889.53277forward
CNT30429165Arabidopsis halleriPapaver somniferum13.0822.2593.6779forward
CNT30115231Arabidopsis halleriEutrema salsugineum12.4220.3398.6775forward

Expression of CNT30477439

Peptides detected in this lncRNA

>peptide 1 (33 aa)
GFNGHKISIDRPNICKRENECLGFCCRIKKQYG*

>peptide 2 (41 aa)
MMLCGSLIQSPQKDWPLAINLRIIGLHLGLQCVVIICEVTI*

Sequence

>CNT30477439
GGCTTTAATGGGCATAAAATTAGTATCGACCGGCCCAATATTTGCAAAAGAGAAAACGAGTGTCTAGGGTTTTGCTGTCGTATAAAGAAGCAATATGGGT
GAAAGTGAAACTAACGAAATCTTTCTGAATTCGCGGCCGCTCATTTTCCTGAAATTTGCATTAGAATCCGAGGAGTGAATCCACCATGAGGGCTAAGTGG
AAGAAGAAGCGTATGAGGAGATTAAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAATCAGTAATTGGCTTTGGTTTGCGTCCGATAGTGGATTGGTA
TGATGCTGTGTGGATCTCTGATTCAATCCCCCCAAAAAGACTGGCCACTCGCAATCAACTTACGAATTATTGGTTTACACCTAGGATTGCAATGTGTTGT
CATAATTTGTGAAGTCACCATATGAAAGAGGGGACAACGTGTTGGCTAATCATATGATCAAAAAATTAGTGTACCTTCGAATGTACCAATGTAAAATTAT
GTTGTGCGAAAATATTCTCTGTTAATGGGGATACTAGAATATAATTTTTTGGTAATTGAATTGTGTTTTGAATTTTACCGAAGTGATTGTGATTCATCTA
ACAA