Detailed information on CNT30477425


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374983Arabidopsis halleriArabidopsis thaliana25.3885.7592.75331forward

Expression of CNT30477425

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKCFTLFICETFAKESKFPCYLYMITTLLQY*

>peptide 2 (48 aa)
MLIGVSFILIQKIFSCFYSIGYMKSLQEHTENSVKNLNHEHVCDLKHKR

>peptide 3 (41 aa)
MRKEVPKKRSLVLPSLRRAFSLYDQINLIDNVSEDQLRFQE*

>peptide 4 (71 aa)
MVFFSQQSLELLIVGCGRYNHPLNPQVRQFVKSIGMKLETVDSRNAASTYNILNEEGRIVAAALLPYGVTS*

>peptide 5 (50 aa)
MLSLHDNHIVAILKLSLFHQNVNWSELYLNTEDIFLLLFHWLHEKSPRTH*

Sequence

>CNT30477425
TATGTTGGTAAACAAAAAAAAACTCTAACCCAAAGGGAATAACCAATCTATTTAGCTAGTGAGTGCAAACCGATTTGGATAAGTGGTTAGACACGAATAA
CCAATAAACCGGTTTGGTTCAAGAGTTTCTCTTTAGAACAGTTAAGACTGGTGAAGATGGCAGTGAGACAACGTTGCCGAAATTGATTCGAAGCATGAGG
AAGGAAGTTCCTAAGAAGCGTAGTCTTGTCTTACCATCTTTGAGAAGAGCTTTCTCTCTCTACGATCAGATCAATCTCATCGATAACGTTTCTGAGGATC
AGCTCCGATTTCAGGAGTAAATCATTCATGCTTATAATTTGACTATGCAGCAATGGAATTTGGATTAGTGGTGGTGCTTTTTGCAGGTTTGATGAGACGA
GTTTCACTGTGAATGGTGTTAAATACCAAGGAAGCTTGCTCTGTGTTGGGAATTTGCTAATGTCATGGAGCCCTCGTTACTTCTCCGATATAACAACGGA
TAGGTACCTTTGTCCAAAAAAAAAAAACAACGGATAGGTATCCCAACATTTTCCATGTCTATTTCATGGATGCAGCTTGTAAGTTGATTAGATCCACTTT
CCTTATACAATTTTCTTTTGGTTGAAATGGATCCTTCGTACCTATGCTTACGCCATATTGTTAGTGGCTAAAAAGTAAAAACCTTTTGCACATATTGAAG
TGTATCAGTGGTTTTGATTCTCCCTTTTATGGTTTTTTTTTCACAACAATCTCTAGAGCTCTTGATCGTCGGGTGTGGAAGATACAACCACCCACTGAAT
CCCCAAGTCCGTCAGTTCGTTAAGTCAATTGGCATGAAGCTAGAAACAGTTGATTCTAGAAATGCTGCATCAACTTACAACATACTGAATGAGGAAGGCA
GGATTGTGGCTGCTGCATTGCTTCCTTATGGAGTTACATCGTAAGAAACTCAACACCTCTGGAATACTGTAGAACAAACTTCCAACAACTCGAGTCGATC
TTTATAGTTAAAACACCAACATGGTCTTGTCTACTGTATATGAAATGTTTCACACTCTTTATTTGTGAAACTTTTGCAAAAGAATCGAAATTTCCATGCT
ATCTTTACATGATAACCACATTGTTGCAATATTGAAACTTTCCTTGTTTCACCAGAATGTTAATTGGAGTGAGCTTTATCTTAATACAGAAGATATTTTC
CTGCTTTTATTCCATTGGCTACATGAAAAGTCTCCAAGAACACACTGAGAACTCAGTAAAGAACCTAAACCACGAGCACGTTTGTGATTTAAAACATAAA
AGAT