« Back to Prunus dulcis search


Detailed information on CNT3047739


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMALT000207, E-value = 1e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30612419Prunus dulcisArabis alpina7.3330.6686.1565forward
CNT30708037Prunus dulcisPrunus avium14.6648.3394.62130reverse complement

Expression of CNT3047739

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MTNLSPILYVILGFNGFWASTLVLLIFGAIK*

>peptide 2 (39 aa)
MPKNWCAKWHSTPSLQQHVSFRHGKATHEFSLAWDCFFV*

>peptide 3 (73 aa)
TIKICIKACIHIYFVENIIGYVTSRIGSTVARYCPLWAPCTHGFVSGNSRATSQWVTHPGIALAPTRLTLEFS*

Sequence

>CNT3047739
ACTATTAAAATTTGTATAAAAGCTTGCATACATATTTATTTTGTTGAAAATATAATTGGATATGTCACATCCCGGATCGGGTCTACTGTAGCACGATATT
GTCCACTTTGGGCCCCCTGCACTCATGGTTTTGTTTCTGGGAACTCACGAGCAACTTCCCAGTGGGTCACCCATCCTGGGATTGCTCTAGCCCCAACTCG
CTTAACTTTGGAGTTCTCATGACTCCGAAGCTAGTGAGCTCCCAAAAGGCCTCGTGTTAGATGGAGGTTGGCATGTACATATAAGGCACATCACCCCCTC
TCCGTTAATCGATGTGGGATGTTACATAATACATGACTAATTTATCCCCTATTTTGTATGTCATATTGGGTTTTAATGGCTTTTGGGCCTCAACATTAGT
CCTCTTGATTTTTGGGGCAATAAAGTGACAATGAGATGGGCCAAATAATCAATTAAACATGCCCAAAAACTGGTGTGCGAAGTGGCATAGTACTCCGTCT
TTGCAACAACATGTCTCCTTTCGTCATGGTAAGGCAACGCATGAGTTTAGCCTAGCATGGGATTGTTTTTTTGTTTGACATGATTAATTTTCTTAGCTTG
TTTTTCTTGAAAGAATTGCACTAACTTTGTTTTGTTTTGGGCATAGATAATCTTGATAGTTCATAATTGTTTGGAGCTAGCTTATGAGATAGATTTAGGC
ATGGCGTGTTATTGATATGCTTAAGTGTTTTGACTGCAATGATTGGGCATGGTATGAGTGATCCAAAACTTCTAGTTGATAGAACTATGAATTCCTAGTT
TAAAGGAATAAGGGAACGAGAGGAATTTTAAGACAATTAGAGAAACAAAAGGAAGAAGCAAAGGAATTGCTTTGAGTTTTGCTTTCA