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Detailed information on CNT30477276


BLAST search results

BLAST vs Swiss-Prot:
sp|F4I114|Y1960_ARATH, E-value = 3e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371700Arabidopsis halleriArabidopsis thaliana74.7421.6393.72716forward
CNT3097448Arabidopsis halleriSolanum tuberosum19.135.6780.33183forward
CNT3059920Arabidopsis halleriArabidopsis lyrata78.8190.3195.36755forward
CNT30454948Arabidopsis halleriSaccharum spontaneum6.3721.3386.8961forward
CNT30115019Arabidopsis halleriEutrema salsugineum84.9777.8288.33814forward

Expression of CNT30477276

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDLLESNRSLSVTAALGERAVAQIQPITNKRPLK

>peptide 2 (48 aa)
MRISLAINRTLSGSMFTNRTFFIATIFPVSRSLALYTLLTLRSEEPIL*

>peptide 3 (34 aa)
MENSSSVAMFKPTEQLLHIALDLKTKEFDSRSCG*

>peptide 4 (44 aa)
QWHRATAQVLCTIRLQHDWSAADLDHPGKNSPIQNHQSSRHRHY*

Sequence

>CNT30477276
CTCAGTGGCACCGAGCAACAGCTCAGGTGCTCTGTACCATAAGGTTACAACACGACTGGTCAGCTGCAGATCTTGATCACCCCGGTAAAAATTCGCCAAT
CCAAAATCACCAATCTTCAAGACACCGTCATTATTGATCAAGAGATTTGATCCTTTAATATCACGATGGAGAATTCCTCGTCTGTGGCAATGTTCAAGCC
CACGGAACAATTGCTGCATATAGCACTTGATCTGAAAACGAAAGAATTTGATTCCAGGAGTTGCGGCTAGACCTGCGAGATCATGTTCCATGTACTCAAA
GACAAGGTAGAGGCTACCTGAGAGTCTAGAGGTGACTAGACCTTCTAGCTTCATAACATTGGGGTGATCAAGCTTACGAAGAATGAGAATCTCCCTGGCC
ATAAACCGGACACTCTCTGGATCCATGTTCACAAACCGAACTTTCTTCATCGCCACAATCTTTCCCGTTTCAAGGTCTCTAGCTTTGTATACGCTGCTGA
CTCTGCGCAGCGAGGAACCCATCCTTTAATTGCTTCTCCGGCAACAGAAGCCAACCAAGACGGCCATTCTGCGCCAGTGAGTTCCGGTTTATTGCTGATC
ACACGTCCTGGCTGCTGCTGAGTTGGCTGTGCAACCGGTATAGCCGTAACTCTTCTGGTGGGGTTCCTAGTCGGAGCTCCCACAACAACCACCGGCTTGA
TGCTGTTTCGATCGGATGCCGTGGAGGGACGGCGCGCCACAGGATAACCATTAGCCACAATGGTGATGGAAGCCGAAGAAGTCGTACGTGTGAAAGATCC
TTCCTTTTTGGATGAAGACGAAGATGACGGAGGATGATGAGGGATGAGTTGAAGGATGGATTTGCTGGAATCTAATAGGTCTTTATCGGTAACGGCGGCG
CTTGGTGAACGGGCGGTGGCACAAATACAACCCATTACAAACAAACGACCACTCAAAC