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Detailed information on CNT30477240


BLAST search results

BLAST vs Swiss-Prot:
sp|P43287|PIP22_ARATH, E-value = 7e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547793Arabidopsis halleriIpomoea triloba27.0835.6281.41156forward
CNT30159576Arabidopsis halleriPistacia vera21.715.7888125forward
CNT30221132Arabidopsis halleriHordeum vulgare11.8129.4485.2968forward
CNT30385683Arabidopsis halleriTriticum turgidum15.9741.4485.8792forward
CNT30586754Arabidopsis halleriMusa acuminata11.1123.789.0664forward
CNT30552571Arabidopsis halleriOryza glaberrima13.5430.8388.4678forward
CNT30435838Arabidopsis halleriAegilops tauschii14.4133.3385.5483forward
CNT30254684Arabidopsis halleriAvena sativa16.6742.6786.4696forward
CNT30680173Arabidopsis halleriTriticum urartu14.4134.1685.5483forward
CNT30355349Arabidopsis halleriLactuca sativa22.421.584.5129forward
CNT30101140Arabidopsis halleriOryza rufipogon14.4131.6884.3483forward
CNT30575194Arabidopsis halleriOryza barthii11.2831.7187.6965forward
CNT30116634Arabidopsis halleriOryza nivara11.2830.9589.2365forward
CNT30112022Arabidopsis halleriFicus carica14.4129.4387.9583forward

Expression of CNT30477240

Peptides detected in this lncRNA

>peptide 1 (43 aa)
NTNRNVGVSSVAFGISGGEDCVDEHECSDDLCGKSRASVVTVG*

Sequence

>CNT30477240
AAATACTAACCGGAACGTGGGAGTCTCTAGCGTTGCGTTTGGGATCAGTGGCGGAGAAGACTGTGTAGACGAGCACGAATGTTCCGATGATCTCTGCGGC
AAGTCCCGTGCCAGTGTTGTAACCGTCGGCTAGAGAGTTGGCTCCTCCACCGTAACGAACGTAGTAAGAGCTTTGAAAAGCCTTCACAAACCCAACTCCA
CAAATAGCACCCAAACACTGAGCCACCATGTAAAGCACCGCCCTAATCAGCGACACCTTCCGTGCCAAGAACAAACCAAACGTCACCGCCGGCCCACGCG
ATACCGAGGATTCCAACGCCGCCACAGTCAACTCCACCGGCGGTTTTGTCAGACTGAATCTTGTAACCGATAACAGTCAAAACGGTGACGTACAAGAATA
GGAGAGTAGCTACGAACTCAGCGATGACTGCTCTGTATAAAGACCACTTCGTAAGCTCCTCCGCGTCGAAAAACGGTGTTGGTGGCGGATCCTCGTAGTC
CCTCGTCTGAAACCCCTCAGGTCCTTCCACGTCTTTCGCCATTTCTATACTTTTGTTATGAAAGTTGTGTTTTGTG