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Detailed information on CNT30477004


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372647Arabidopsis halleriArabidopsis thaliana60.3692.4190.3268forward
CNT3059875Arabidopsis halleriArabidopsis lyrata66.8956.6892.26297forward
CNT30135839Arabidopsis halleriLolium perenne17.5732.9192.3178forward

Expression of CNT30477004

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRPLCFLLVSLPFSLANIVLTIASFYVSDFCFRF*

>peptide 2 (30 aa)
CLENDGNSPEKFIYFRLRFSRAFLLARVCV*

>peptide 3 (45 aa)
MSQTFVLDFDQNIKVSDFTSSSTTSLLEFRHSFAPFCFNLIFYKLG

Sequence

>CNT30477004
CTTGTCTTGAGAATGACGGAAATAGCCCTGAGAAGTTCATTTATTTTCGATTAAGATTTTCTAGGGCTTTTCTACTAGCAAGAGTGTGTGTGTAACGAAG
CCTTCGTTTCCCTGAAGCGATTCAGAGCGAAAAGATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGCTTAAGAGGAAGAGACGAAAGATGAGACAG
CGATCTAAGTAAATTTGCCTTTGAAGACAATGCGACCACTCTGTTTCTTGCTTGTATCCCTCCCTTTCTCTCTTGCAAACATTGTTCTTACTATAGCTTC
CTTTTATGTCTCAGACTTTTGTTTTAGATTTTGATCAAAACATAAAAGTTTCAGACTTTACTTCATCATCTACCACTTCACTGCTTGAATTTAGACATTC
TTTCGCTCCATTTTGTTTCAATCTGATCTTTTATAAGTTAGGCA