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Detailed information on CNT30476966


BLAST search results

BLAST vs Swiss-Prot:
sp|P11490|PLAS1_ARATH, E-value = 3e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708837Arabidopsis halleriGlycine max18.1422.2291.2580forward
CNT3010819Arabidopsis halleriZea mays19.0522.5284.5284forward
CNT30557376Arabidopsis halleriPanicum hallii19.0528.1984.5284forward

Expression of CNT30476966

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVRKQENHRRILEEPPWPLNFRLKQSKLLLQRR*

>peptide 2 (50 aa)
MAIEFPAKTIEAAVATAMTPKSFKEDFTESLGAVLVAEEDLMVVDNVVQRH

>peptide 3 (91 aa)
EFPDHTSTLVRRTIETVRARLCQSNLVTLSRTIKKLCLVHRDLGRVHTTRDLVFVEHNIVWEPCVVLEHDLLSFSHCEFRWYENKRTIVGS*

Sequence

>CNT30476966
TGAGTTTCCCGACCATACCAGCACCCTGGTGCGGCGCACAATAGAAACCGTAAGAGCCAGGCTCTGTCAAAGTAACCTCGTAACTCTCTCCCGCACCATT
AAGAAGCTCTGTCTCGTCCATCGAGATCTTGGTCGCGTCCACACCACTAGGGATCTCGTCTTCGTCGAACACAACATTGTGTGGGAACCCTGCGTTGTTC
TTGAACACGATCTTCTCTCCTTTAGCCACTGTGAATTCAGATGGTACGAAAACAAGAGAACCATCGTCGGATCCTAGAAGAACCTCCATGGCCATTGAAT
TTCCGGCTAAAACAATCGAAGCTGCTGTTGCAACGGCGATGACGCCGAAATCCTTCAAAGAGGACTTCACAGAGAGCTTAGGTGCCGTCCTGGTAGCGGA
GGAGGATCTAATGGTGGTGGATAATGTCGTACAACGGCACC