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Detailed information on CNT30476368


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-146

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30368559Saccharum spontaneumSorghum bicolor53.9295.9692.57902forward
CNT30604305Saccharum spontaneumOryza punctata40.9475.6987.45685forward

Expression of CNT30476368

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVFPVKVLTKICMPPLRRRTRWRVDSFWML*

>peptide 2 (29 aa)
MDKTFVINSSRPQTSPYAKTHISGQDGLQ*

>peptide 3 (47 aa)
MNICTSPVLNATKAGYVLFIWPNLLNEKKEPDSTKTSVKYTRTVLQG*

>peptide 4 (45 aa)
MYESNTCTVNTQVNLIAGYQRETAKANQVNLLLHISTSLQDSTSQ*

>peptide 5 (37 aa)
MVSDDSTSSVMVFPVRVFTKICIPPRRRSTKWRVDSF*

Sequence

>CNT30476368
GCTCATTTAACTTTTGATATGGGCTTCTAAGTCCATGACACCTGACAACTTGGTCACTTTTTTAAAAGCATAATCACGTTCGTTCTATTGCCTCAGTTTG
TTGGTGGACACGGGTGCTCGTAGGTGTGTGGTTTGTACCATGACGAACATCTCTTTGATACAGATACTAGTGGGAATATGAGCTATTTTAGTTATAGATT
AATCCACGAAAGCAATATGTTGATCTCGAGACAATGAACATATGCACGTCACCAGTACTGAACGCAACCAAAGCAGGCTACGTTCTTTTTATATGGCCTA
ACCTTCTAAACGAAAAAAAGGAACCAGATAGTACGAAAACATCAGTAAAATACACGAGAACAGTCCTACAAGGTTAAACTCAAAAAAAGAAAAACAGTCA
AATCAAACAAACTAAAAAACATTGGTCGCTGACATCCGATGGGACGCTCACACTCAGAATCCTAATATCGCTTACTTTCGAACCCGATATCTGTTTTCTG
AGATCGAAAGCATAATCGCCCCGGCTTATAGTAGAGTATCTCTGAGATCGAAAGCATAATCGCCCCGGCTTTACTAAAGCAGATCAGGAAATAAGTTTGC
AAGAAAAGGTTCTCTTCGACACCAGCATGGATAAAACATTTGTCATCAATAGTTCGAGACCTCAGACATCACCATACGCCAAAACACATATATCTGGCCA
AGATGGCCTCCAATAGTTTGAATGTACGAATCCAACACTTGCACAGTTAACACACAGGTAAATTTGATAGCAGGCTATCAGAGAGAAACAGCTAAGGCAA
ACCAAGTTAACTTGCTGTTGCACATCAGCACAAGTTTGCAGGACTCGACATCACAGTAGAAACACACGGCATGGAAACACACACGGCAACCAAACAGTGC
ACACCACTGAGAGAACCACCCAGACGAACAACTTCGATTAATTACTGACCACCACCACCACGGAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGA
TATTGTAGTCAGCGAGCGTGCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTCGC
CTTCACATTATCAATGGTGTCAGACGACTCGACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTTTTCACAAAGATTTGCATACCACCACGAAGGCGGAGC
ACCAAGTGGAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTGCGACCATCCTCAAGCTGCTTCCCTGCAAAGATGAGGCGCTGCTGGTCTGGTG
GAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCGAGCGTGATGGTCTTTCCAGTCAAGGTCTTGACAAA
GATCTGCATGCCTCCCCTGAGGCGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTATAATCAGCGAGCGTCCGCCCATCCTCAAGCTGCTTGCCA
GCAAAGATCAGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATTGTATCTGAGGACTCAACCTCGAGGGTGA
TGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATCTGCATCTGCATAAACAAAAATCACATGGTAAGACA