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Detailed information on CNT30476294


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-153

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30368741Saccharum spontaneumSorghum bicolor87.0696.7593.891130forward

Expression of CNT30476294

Peptides detected in this lncRNA

>peptide 1 (48 aa)
KRFSSTPAWIKHLSSIVRDLRHHHTPKHIYLAKMASNSLNVRIQHLHS*

>peptide 2 (30 aa)
MVFPVRVLTKICMPPLSLSTRWRVDSFWML*

>peptide 3 (45 aa)
MYESNTCTVNTQVNLIAGYQRETAKANQVNLLLHISTSLQDSTSQ*

>peptide 4 (40 aa)
MVSDDSTSSVMVFPVRVFTKICIPPRRRSTKWRVDSFWIL*

>peptide 5 (36 aa)
KVLFDTSMDKTFVINSSRPQTSPYAKTHISGQDGLQ*

Sequence

>CNT30476294
AAAAGGTTCTCTTCGACACCAGCATGGATAAAACATTTGTCATCAATAGTTCGAGACCTCAGACATCACCATACGCCAAAACACATATATCTGGCCAAGA
TGGCCTCCAATAGTTTGAATGTACGAATCCAACACTTGCACAGTTAACACACAGGTAAATTTGATAGCAGGCTATCAGAGAGAAACAGCTAAGGCAAACC
AAGTTAACTTGCTGTTGCACATCAGCACAAGTTTGCAGGACTCGACATCACAGTAGAAACACACGGCATGGAAACACACACGGCAACCAAACAGTGCACA
CCACTGAGAGAACCACCCAGACGAACAACTTCGATTAATTACTGACCACCACCACCACGGAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATAT
TGTAGTCAGCGAGCGTGCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTCGCCTT
CACATTATCAATGGTGTCAGACGACTCGACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTTTTCACAAAGATTTGCATACCACCACGAAGGCGGAGCACC
AAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGAA
TGCCCTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCGAGCGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGAT
CTGCATGCCTCCCCTGAGGCGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAAGGTACGGCCATCCTCAAGCTGCTTGCCAGCG
AAGATTAGCCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCGATCGTATCAGAGGACTCAACCTCAAGAGTGATGG
TCTTCCCTGTGAGGGTCTTGACAAAGATCTGCATGCCACCCCTAAGCCTGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTATAATCAGCGAGCGT
CCGCCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATTGTA
TCTGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATCTGCATCTGCATAAACAAAAATCACATGGTAAGACA