Detailed information on CNT30476145


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-135

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192668Saccharum spontaneumSecale cereale75.6780.387.73905forward
CNT3067522Saccharum spontaneumLeersia perrieri75.1772.7385.43899forward
CNT30604126Saccharum spontaneumOryza punctata75.578.8684.27903forward

Expression of CNT30476145

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTETNSVCQDKNHVHLSITVIKLLQRKAAYVLRRNLDTRDSDLTSATN*

>peptide 2 (30 aa)
MVFPVRVFTKICMPPLSLSTRWRVDSFWML*

>peptide 3 (62 aa)
AIFLIKKCGNHSEISRPAKTQNDRNKFCMPRQKPCSLIHYGNQAATKKGSICFAEKLGHKRL*

>peptide 4 (66 aa)
MFCGETWTQETLTSHRRQTELSNLDTRDSISHQTRQTELSNPTIPDLYWPPRRRRTRWSVDSFWML*

>peptide 5 (50 aa)
MPSLSWIFAFTLSIVSDDSTSRVIVLPVSVFTKICIPPRSRSTKWRVDSF*

Sequence

>CNT30476145
GGCAATTTTCCTCATAAAAAAATGTGGCAATCACAGTGAGATCAGCAGACCAGCTAAAACGCAAAATGACAGAAACAAATTCTGTATGCCAAGACAAAAA
CCATGTTCACTTATCCATTACGGTAATCAAGCTGCTACAAAGAAAGGCAGCATATGTTTTGCGGAGAAACTTGGACACAAGAGACTCTGACCTCACATCG
GCGACAAACTGAACTCAGTAACTTGGACACAAGAGACTCAATCTCACATCAGACACGACAAACTGAACTCAGTAACCCAACCATCCCAGACCTTTACTGG
CCACCACGGAGGCGCAGAACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCA
GGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCAACCTCCAGGGTGATTGTCTTGCC
AGTCAGCGTCTTCACAAAGATCTGCATACCACCTCGGAGCCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGGCCA
TCCTCAAGTTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTTGCCTTTACGTTATCGATCGTATCAGAAG
ACTCAACTTCAAGTGTTATGGTCTTCCCAGTCAGAGTCTTGACAAAGATTTGCATGCCTCCCCTTAGCCTGAGCACAAGGTGAAGGGTGGACTCTTTCTG
AATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTG
GCCTTCACATTGTCAATCGTGTCTGAGGTCTCGACCTCCAGTGTGATGGTCTTTCCAGTAAGGGTCTTCACAAAGATCTGCATGCCACCCCTGAGCCTGA
GCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGCGAGTGTCCGCCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGG
TGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTT