Detailed information on CNT30475689


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 2e-95

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30308860Saccharum spontaneumTriticum aestivum63.0962.4291.4465forward
CNT30397839Saccharum spontaneumTriticum turgidum63.0935.3692.04465forward
CNT3067606Saccharum spontaneumLeersia perrieri63.2326.2791.42466forward
CNT30349330Saccharum spontaneumEragrostis tef62.6929.8190.69462forward
CNT30368600Saccharum spontaneumSorghum bicolor98.9190.988.07729forward
CNT30576670Saccharum spontaneumOryza barthii63.6456.0393.18469forward
CNT30557382Saccharum spontaneumPanicum hallii62.9665.3592.46464forward

Expression of CNT30475689

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSEDSTSSVMVLPVRVLTKICMPPLSLSTRWRVDSFWML*

>peptide 2 (43 aa)
MSLCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICI

>peptide 3 (85 aa)
MNKHSLIATTSGFTYSSFHSLTKLPHSSKCSQIARQHRTLHQTGKQETRLNQDSDHRTRRQTFSQSPLGDTQGTSTILVNPGTDD*

>peptide 4 (67 aa)
MEGGLLLDVVVSKGAAILQLLAGKDEPLLVRRNAFLVLDLSLDIVNGVRGLNLEGDGLASEGLNEDLH

Sequence

>CNT30475689
ATGAACAAACACAGCCTGATAGCCACAACTTCAGGGTTCACTTATTCTTCATTCCATAGTTTGACCAAACTGCCGCACAGCAGCAAGTGTTCACAAATAG
CCAGACAACATAGGACTCTGCATCAGACAGGCAAACAAGAGACAAGACTCAACCAGGACTCGGACCACAGGACACGAAGACAGACATTCTCCCAATCTCC
ATTGGGAGACACACAAGGCACCAGCACCATACTTGTGAACCCAGGGACTGACGACTGACATAGCCCAGCAGGACTTACTGGCCACCACGGAGGCGGAGCA
CCAGGTGGAGTGTCGACTCCTTCTGTATGTTGTAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGG
GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCTATCGTGTCTGAGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAG
ATCTGCATGCCTCCCCTGAGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGG
CAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGAT
GGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATC