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Detailed information on CNT3047566

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30529029	Prunus dulcis	Eucalyptus grandis	46.24	43.55	86.21	892	forward
CNT30549732	Prunus dulcis	Ipomoea triloba	9.69	50.13	90.37	187	reverse complement
CNT30618959	Prunus dulcis	Sesamum indicum	45.88	14.06	88.14	885	forward
CNT3020650	Prunus dulcis	Citrullus lanatus	63.87	70.8	87.5	1232	forward
CNT30730408	Prunus dulcis	Corchorus capsularis	15.55	63.42	94	300	forward
CNT30632355	Prunus dulcis	Vigna unguiculata	31.62	70.28	87.21	610	forward
CNT30201085	Prunus dulcis	Pisum sativum	21.62	20.64	92.33	417	forward
CNT3094383	Prunus dulcis	Solanum tuberosum	11.15	100	86.05	215	reverse complement
CNT30194121	Prunus dulcis	Secale cereale	17.16	36.98	91.54	331	forward
CNT30589320	Prunus dulcis	Musa acuminata	7.52	29.84	93.79	145	forward
CNT30237795	Prunus dulcis	Brassica oleracea	23.69	11.91	89.5	457	forward
CNT30510815	Prunus dulcis	Solanum lycopersicum	13.17	53.25	90.16	254	forward
CNT30171250	Prunus dulcis	Trifolium pratense	5.18	27.4	94	100	forward
CNT30245953	Prunus dulcis	Avena sativa	4.3	31.2	89.16	83	reverse complement
CNT30446760	Prunus dulcis	Saccharum spontaneum	13.17	22.5	93.31	254	forward
CNT30606803	Prunus dulcis	Gossypium raimondii	12.39	84.45	85.77	239	forward
CNT30232528	Prunus dulcis	Ananas comosus	45.98	44.82	85.68	887	forward
CNT30217417	Prunus dulcis	Kalanchoe fedtschenkoi	11.51	47.44	94.59	222	forward
CNT30655383	Prunus dulcis	Rosa chinensis	45.93	24.73	93.91	886	forward
CNT30214788	Prunus dulcis	Helianthus annuus	14.77	89.34	88.07	285	forward
CNT30713835	Prunus dulcis	Malus domestica golden	11.92	31.38	91.3	230	reverse complement
CNT30627898	Prunus dulcis	Daucus carota	45.88	28.75	87.01	885	forward
CNT30351181	Prunus dulcis	Eragrostis tef	6.22	23.76	85	120	forward
CNT30595988	Prunus dulcis	Oryza meridionalis	17.16	31.67	92.45	331	forward
CNT30359977	Prunus dulcis	Lactuca sativa	24.11	26.05	85.38	465	forward
CNT30430934	Prunus dulcis	Papaver somniferum	44.79	13.23	86.81	864	forward
CNT3057361	Prunus dulcis	Amborella trichopoda	23.48	9	86.98	453	forward
CNT3022800	Prunus dulcis	Populus trichocarpa	11.51	65.29	93.69	222	forward
CNT30332506	Prunus dulcis	Dioscorea rotundata	20.94	44.35	86.39	404	forward
CNT30103542	Prunus dulcis	Oryza rufipogon	12.08	32.86	93.13	233	forward
CNT30116375	Prunus dulcis	Oryza nivara	4.67	24.86	87.78	90	reverse complement
CNT30604206	Prunus dulcis	Oryza punctata	10.06	48.74	89.18	194	forward
CNT30114189	Prunus dulcis	Ficus carica	45.72	22.39	92.86	882	forward

Expression of CNT3047566

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKFISLLQLIKIVVLNDTYVESLLFVSSIY*

>peptide 2 (33 aa)
PSLRTVLESFRPHTAQRSNSFGVLFFHYPILIK*

>peptide 3 (30 aa)
LPLEPYLRVSDLIRLSGQILLVSYFFITLY*

>peptide 4 (29 aa)
MVIRVSKIRTRWMFVVPTIVSPDPDKEKG*

Sequence

>CNT3047566
CCCTTCCCTTAGAACCGTACTTGAGAGTTTCCGACCTCATACGGCTCAGCGGTCAAATTCTTTTGGTGTCCTATTTTTTCATTACCCTATACTAATTAAA
TGAGATTTCTCAGAGATATATCCCATTTTTTTTTTTTCTCTAGTTAACCAAAAGAAAGAGGTTAATTACATCAGTTTCAAACTAAAATTTTTATTAATAA
TCAGTTTTATCTTTTCTCCCACCTTCAGAAAAATAAAGCATAAGCGTTTTCACTATTATTCGAATTTTCTGAAAGGTAACTATCTCGGTTTCATATATAA
ATTTATATAGAATCTTTGAAAAAGGCCTTCCTTCATAAGAAGGAAAAGACTTACCATCTTTGGGATCTGATGCTACACCGCTGCTCAATACCTTAGGGGA
TCGACTCTATTACATAAGTGGATTCCTAACTTTTATCTCATATCATGACATAAGTAAGCAGTTCTTATTGTATCGGACCAAAACCTCGCGAATTGATCTT
TACGGCGCTTCCTCTATCAATTAGATCCTTTATCCATAGAATAAAAGTAAAGTATCTAGGCATACCTATTTCTTCATATTCATATTTCGACTTTTATGAA
GTTTATTTCTTTGCTACAGCTGATAAAAATCGTTGTTTTGAACGATACATATGTAGAAAGCCTACTCTTTGTTTCTAGTATTTATTAACGTTAACGGATT
TTTTCTTTCTTTCCTTTTTTTATTTCTATAGTGGAGATAGTCGCACGTAATGACAGATCACGGCCATATTATTAAAAGCTTGTGGTAAGAATGGGTTTCG
CTCTAGGGCCCGAAAATAATATTCCAAAGCTTTCGTATGTTCCCCGTTACTTGTGTGGATAAGGCCTATGTTATAGAGTATATAACTTCGATCATAAGGA
TCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCGACATCCGTTACGGTCGCCATTCGATTCAAA
GAATCTCCGTTTCAGAACCGTACATGAGATTTTCATCTCATACGGCTCCTCCTTTATGTGCATAATGATAATAATACATGGAATCAAAAAGACTGAAATA
TTCTCATTATAAACTAAGCGGGGCTGGTGTTTTTACAAGAAATCTCTAGCCAACCTTCTTGTAGAAGATCTTTCCTTAACATCAAGCATGTTGGTATTAG
ATAAAAAAAAGTTACTCCAACAATTTCTTTGTCTTCAACGCCCTTAAATTTGCAGGAATTAGTCACTTCAACAGTCTTCGATGGTTATACGGGTATCCAA
AATACGAACGAGATGGATGTTTGTTGTCCCAACCATTGTTAGTCCCGATCCTGATAAGGAAAAGGGATAATTTATAACAAAGTTTTCGTGTGTTGATTCC
TAGGAGTAGTGCTTCTTCCCCTATGCCCCCTATTGGTACTAGTGGAGTAGGGTTGACCTAACCCATAGGTGTAACCTTTCGCTCAATACTCTAGAATCGA
CAATTGAAGCATCTGAGGCTGCATTAATCGGGGATACACGACAGAAGGCGTTGTTTTATTTACAAACTTCACCTTCAACAAGCGTAGATTTATTTCCATA
ATTTTTTTCTTCCTATCCCGAATAATGTTGTCTTTCTCTTAAGACTGAGAGCGGTAAAAATAAAAAAAATAATCAAATCGCACCATCTCTGTAATAGGTG
AATGCCTCTTTTTCTCCCGAAGTTGTCGGAATTATTCGTAATAAGATATTGGCTACAATTGAAAAGGTTTTATCAATAAAATTTCCATTTATCCCAGATC
TAGACATAGGTGTATTAATCCATTCTATAATTTATTTTAATTCCCTTTCGTGAGAAAACGATCCCACAAACAAAGGAATTGTGCAGTACGAAATAACATA
AAAATGGATTCATTAAAAAGGAAGACCTT